SMTL ID : 5f8n.1

Enterovirus 71 Polymerase Elongation Complex (C3S6 Form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.271, H.273, C.282 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.271, A:H.273, A:C.282

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: P.202, G.211, C.212, N.213, T.216, F.217, K.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.213, A:T.216 Salt bridges: A:K.220

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.3: 7 residues within 4Å: Chain A: R.163, R.174, Y.234, G.236, Y.237, D.329 Chain C: U.19 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.236, A:Y.237, A:D.329 Water bridges: A:R.174, A:R.174, A:D.238 Salt bridges: A:R.163

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: A.209, G.211, C.212, Y.327, L.375 Chain B: U.21, C.22 Chain C: C.17 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.211, A:C.212, A:C.212, A:Y.327, A:Y.327, A:R.377

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shu, B. et al., Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-06-22

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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