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SMTL ID : 5fa1.1
The structure of the beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase domain of WbbB
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.10 Å
Oligo State
homo-dimer
Ligands
2 x
C5P
:
CYTIDINE-5'-MONOPHOSPHATE
(Non-covalent)
C5P.1:
13 residues within 4Å:
Chain A:
P.162
,
R.164
,
V.227
,
L.228
,
Q.229
,
R.264
,
A.265
,
H.266
,
P.267
,
S.286
,
S.301
,
S.302
,
V.303
18
PLIP interactions
:
18 interactions with chain A
Hydrophobic interactions:
A:V.303
Hydrogen bonds:
A:P.162
,
A:L.228
,
A:L.228
,
A:R.264
,
A:S.286
,
A:S.286
,
A:S.286
,
A:S.302
Water bridges:
A:Q.229
,
A:Q.229
,
A:D.233
,
A:D.233
,
A:N.235
,
A:N.235
,
A:H.266
Salt bridges:
A:R.164
,
A:H.266
C5P.2:
13 residues within 4Å:
Chain B:
P.162
,
R.164
,
V.227
,
L.228
,
Q.229
,
R.264
,
A.265
,
H.266
,
P.267
,
S.286
,
S.301
,
S.302
,
V.303
21
PLIP interactions
:
21 interactions with chain B
Hydrophobic interactions:
B:V.227
,
B:H.266
,
B:V.303
Hydrogen bonds:
B:P.162
,
B:L.228
,
B:L.228
,
B:R.264
,
B:S.286
,
B:S.286
,
B:S.286
,
B:S.302
Water bridges:
B:R.164
,
B:R.164
,
B:Q.229
,
B:Q.229
,
B:D.233
,
B:D.233
,
B:N.235
,
B:H.266
Salt bridges:
B:R.164
,
B:H.266
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Ovchinnikova, O.G. et al., Bacterial beta-Kdo glycosyltransferases represent a new glycosyltransferase family (GT99). Proc. Natl. Acad. Sci. U.S.A. (2016)
Release Date
2016-05-18
Peptides
Putative N-acetyl glucosaminyl transferase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
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Secondary Structure
None
DSSP
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Fade Mismatches
Enhance Mismatches
Chain
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Rainbow
2° Structure
Bfactor
Bfactor Range
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Proline
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Putative N-acetyl glucosaminyl transferase
Related Entries With Identical Sequence
5fa0.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme