SMTL ID : 5fa1.1

The structure of the beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase domain of WbbB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

C5P.1: 13 residues within 4Å: Chain A: P.162, R.164, V.227, L.228, Q.229, R.264, A.265, H.266, P.267, S.286, S.301, S.302, V.303 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.303 Hydrogen bonds: A:P.162, A:L.228, A:L.228, A:R.264, A:S.286, A:S.286, A:S.286, A:S.302 Water bridges: A:Q.229, A:Q.229, A:D.233, A:D.233, A:N.235, A:N.235, A:H.266 Salt bridges: A:R.164, A:H.266 C5P.2: 13 residues within 4Å: Chain B: P.162, R.164, V.227, L.228, Q.229, R.264, A.265, H.266, P.267, S.286, S.301, S.302, V.303 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:V.227, B:H.266, B:V.303 Hydrogen bonds: B:P.162, B:L.228, B:L.228, B:R.264, B:S.286, B:S.286, B:S.286, B:S.302 Water bridges: B:R.164, B:R.164, B:Q.229, B:Q.229, B:D.233, B:D.233, B:N.235, B:H.266 Salt bridges: B:R.164, B:H.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ovchinnikova, O.G. et al., Bacterial beta-Kdo glycosyltransferases represent a new glycosyltransferase family (GT99). Proc. Natl. Acad. Sci. U.S.A. (2016)

Release Date

2016-05-18

Peptides

Putative N-acetyl glucosaminyl transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative N-acetyl glucosaminyl transferase

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