SMTL ID : 5fa8.2 (1 other biounit)

SAM complex with aKMT from the hyperthermophilic archaeon Sulfolobus islandicu

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 18 residues within 4Å: Chain A: V.10, P.11, T.12, D.34, G.36, C.37, G.38, R.41, I.42, E.59, I.60, N.61, R.64, G.86, N.87, F.88, F.102, L.104 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.12, A:G.36, A:G.38, A:I.60, A:N.87, A:F.88 Water bridges: A:R.64, A:F.102 pi-Stacking: A:F.88 SAM.3: 18 residues within 4Å: Chain B: V.10, P.11, T.12, D.34, G.36, C.37, G.38, R.41, I.42, E.59, I.60, N.61, R.64, G.86, N.87, F.88, F.102, L.104 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.12, B:T.12, B:G.36, B:G.38, B:I.60, B:N.87, B:F.88 Water bridges: B:R.64, B:F.102 pi-Stacking: B:F.88

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: H.128, E.129, H.150 Chain B: H.6 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.128, A:E.129, A:H.150, B:H.6, H2O.2 MG.4: 4 residues within 4Å: Chain A: H.6 Chain B: H.128, E.129, H.150 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.128, B:E.129, B:H.150, A:H.6, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chu, Y. et al., aKMT Catalyzes Extensive Protein Lysine Methylation in the Hyperthermophilic Archaeon Sulfolobus islandicus but is Dispensable for the Growth of the Organism. Mol.Cell Proteomics (2016)

Release Date

2016-06-29

Peptides

Ribosomal protein L11 methyltransferase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Ribosomal protein L11 methyltransferase, putative

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