SMTL ID : 5fat.1

OXA-48 in complex with FPI-1602

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

2 x 602: [[(3~{R},6~{S})-6-[(azetidin-3-ylcarbonylamino)carbamoyl]-1-methanoyl-piperidin-3-yl]amino] hydrogen sulfate(Covalent)

602.1: 13 residues within 4Å: Chain A: A.47, S.48, I.80, W.83, S.96, V.98, K.186, T.187, G.188, Y.189, T.191, R.192, R.228 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.80, A:Y.189 Hydrogen bonds: A:S.48, A:S.96, A:T.187, A:T.187, A:Y.189, A:R.192 Water bridges: A:K.186 Salt bridges: A:K.186, A:R.228 602.11: 13 residues within 4Å: Chain B: A.47, S.48, K.51, W.83, S.96, V.98, K.186, T.187, G.188, Y.189, T.191, R.192, R.228 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.189 Hydrogen bonds: B:S.48, B:S.96, B:T.187, B:G.188, B:Y.189, B:Y.189, B:T.191, B:R.192 Water bridges: B:K.186, B:T.191, B:R.228 Salt bridges: B:K.186, B:R.228

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.184 Chain B: R.184 Ligand excluded by PLIP

2 x CD: CADMIUM ION(Non-covalent)

CD.3: 1 residues within 4Å: Chain A: D.121 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.121, A:D.121, H2O.1, H2O.2 CD.5: 4 residues within 4Å: Chain A: E.15, H.16, E.234 Ligands: CO.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.15, A:H.16, A:E.234, A:E.234, H2O.2

8 x CO: COBALT (II) ION(Non-covalent)(Non-functional Binders)

CO.4: 4 residues within 4Å: Chain A: H.12, E.15, E.234 Ligands: CD.5 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.12, A:E.15, A:E.234, H2O.2, H2O.6 CO.6: 2 residues within 4Å: Chain A: H.68 Chain B: H.156 No protein-ligand interaction detected (PLIP) CO.7: 2 residues within 4Å: Chain B: H.12, E.234 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.12, B:E.234 CO.8: 1 residues within 4Å: Ligands: CO.9 No protein-ligand interaction detected (PLIP) CO.9: 2 residues within 4Å: Chain B: H.118 Ligands: CO.8 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.118 CO.10: 2 residues within 4Å: Chain A: H.156 Chain B: H.68 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.68 CO.12: 3 residues within 4Å: Chain B: H.118, E.125 Ligands: CO.13 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.118, B:E.125, B:E.125 CO.13: 3 residues within 4Å: Chain B: H.118, E.125 Ligands: CO.12 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.125, B:E.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, A.M. et al., Structural and Kinetic Characterization of Diazabicyclooctanes as Dual Inhibitors of Both Serine-beta-Lactamases and Penicillin-Binding Proteins. Acs Chem.Biol. (2016)

Release Date

2016-01-20

Peptides

Beta-lactamase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-lactamase

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