SMTL ID : 5fb4.1

Crystal structure of the bacteriophage phi29 tail knob protein gp9 truncation variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-hexamer

Ligands

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: L.151, F.529, Y.533 Chain F: F.127, K.557, D.558 No protein-ligand interaction detected (PLIP) PEG.2: 7 residues within 4Å: Chain A: F.127, K.557, D.558 Chain B: R.130, F.529, Y.533, Y.553 No protein-ligand interaction detected (PLIP) PEG.3: 7 residues within 4Å: Chain B: F.127, K.557, D.558 Chain C: R.130, F.529, Y.533, Q.555 No protein-ligand interaction detected (PLIP) PEG.4: 6 residues within 4Å: Chain C: F.127, K.557, D.558 Chain D: L.151, F.529, Y.533 No protein-ligand interaction detected (PLIP) PEG.5: 7 residues within 4Å: Chain D: F.127, K.557, D.558 Chain E: R.130, F.529, Y.533, Y.553 No protein-ligand interaction detected (PLIP) PEG.6: 7 residues within 4Å: Chain E: F.127, K.557, D.558 Chain F: R.130, F.529, Y.533, Q.555 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, J. et al., The bacteriophage 29 tail possesses a pore-forming loop for cell membrane penetration. Nature (2016)

Release Date

2016-06-22

Peptides

Distal tube protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Distal tube protein

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