SMTL ID : 5fc2.1

Structure of a separase in complex with a pAMK peptide containing a phospho-serine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x ASP- LYS- SEP- ILE- GLU- VAL- GLY- ARG- 6L3: pAMK, peptide containing a phospho-serine(Non-covalent)

ASP-LYS-SEP-ILE-GLU-VAL-GLY-ARG-6L3.1: 27 residues within 4Å: Chain A: C.99, H.100, S.102, M.105, A.106, E.110, R.111, W.114, W.115, L.351, T.354, F.398, G.399, H.400, G.401, M.425, G.426, C.427, V.462, T.463, D.464, R.465, D.466, I.467, D.468, R.469, R.514 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:M.105, A:W.114, A:W.114, A:W.114, A:W.115, A:L.351 Hydrogen bonds: A:S.102, A:S.102, A:R.111, A:T.354, A:T.354, A:G.401, A:M.425, A:C.427, A:V.462, A:D.464, A:D.464, A:R.465, A:D.466, A:R.469, A:R.514 Water bridges: A:R.111, A:R.118, A:R.465, A:R.469, A:R.469 Salt bridges: A:R.111, A:R.465, A:D.468, A:R.469

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, Z. et al., Structural basis of cohesin cleavage by separase. Nature (2016)

Release Date

2016-03-30

Peptides

separase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

separase