SMTL ID : 5fei.1

Crystal structure of the bacteriophage phi29 tail knob protein gp9 truncation variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: F.127, K.557, D.558 Chain B: L.151, F.529, Y.533 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.533 PEG.2: 7 residues within 4Å: Chain A: F.529, Y.533, Y.553, Q.555 Chain F: F.127, K.557, D.558 No protein-ligand interaction detected (PLIP) PEG.3: 6 residues within 4Å: Chain C: F.127, K.557, D.558 Chain D: L.151, F.529, Y.533 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Y.533 PEG.4: 7 residues within 4Å: Chain B: F.127, K.557, D.558 Chain C: F.529, Y.533, Y.553, Q.555 No protein-ligand interaction detected (PLIP) PEG.5: 6 residues within 4Å: Chain E: F.127, K.557, D.558 Chain F: L.151, F.529, Y.533 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:Y.533 PEG.6: 7 residues within 4Å: Chain D: F.127, K.557, D.558 Chain E: F.529, Y.533, Y.553, Q.555 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, J. et al., The bacteriophage 29 tail possesses a pore-forming loop for cell membrane penetration. Nature (2016)

Release Date

2016-06-22

Peptides

Distal tube protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Distal tube protein

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