- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.17 Å
- Oligo State
- monomer
- Ligands
- 1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 5 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x MET: METHIONINE(Non-covalent)
MET.9: 11 residues within 4Å:- Chain A: Q.117, S.118, S.146, G.148, L.168, R.190, Y.313, L.315
- Ligands: SF4.1, 5X8.10, SAH.11
10 PLIP interactions:8 interactions with chain A, 2 Ligand-Ligand interactions- Hydrophobic interactions: A:Q.117
- Hydrogen bonds: A:S.118, M.9, M.9
- Water bridges: A:G.148, A:E.149, A:E.149, A:E.171, A:R.190
- Salt bridges: A:R.190
- 1 x 5X8: S-adenosyl-L-cysteine(Non-covalent)
5X8.10: 18 residues within 4Å:- Chain A: Y.79, C.80, Q.117, R.169, E.171, M.209, P.239, F.240, I.241, T.278, T.279, A.280, L.315, Y.316
- Ligands: CL.8, MET.9, SAH.11, 41K.12
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:R.169, A:R.169, A:E.171, A:I.241, A:I.241, A:A.280
- Water bridges: A:R.190, A:I.237, A:T.278, A:T.279, A:T.279
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
SAH.11: 21 residues within 4Å:- Chain A: Y.79, C.80, Q.117, S.118, S.146, G.148, L.168, R.169, E.171, R.190, M.209, P.239, F.240, I.241, Y.313, L.315, Y.316
- Ligands: SF4.1, MET.9, 5X8.10, 41K.12
16 PLIP interactions:14 interactions with chain A, 2 Ligand-Ligand interactions- Hydrophobic interactions: A:Q.117
- Hydrogen bonds: A:S.118, A:R.169, A:E.171, A:E.171, A:I.241, A:I.241, M.9, M.9
- Water bridges: A:G.148, A:E.149, A:E.149, A:E.171, A:R.190, A:R.190
- Salt bridges: A:R.190
- 1 x 41K: (2R,4R)-2-methyl-1,3-thiazolidine-2,4-dicarboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rohac, R. et al., Carbon-sulfur bond-forming reaction catalysed by the radical SAM enzyme HydE. Nat.Chem. (2016)
- Release Date
- 2016-04-06
- Peptides
- [FeFe] hydrogenase maturase subunit HydE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.17 Å
- Oligo State
- monomer
- Ligands
- 1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 5 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x MET: METHIONINE(Non-covalent)
- 1 x 5X8: S-adenosyl-L-cysteine(Non-covalent)
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 1 x 41K: (2R,4R)-2-methyl-1,3-thiazolidine-2,4-dicarboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rohac, R. et al., Carbon-sulfur bond-forming reaction catalysed by the radical SAM enzyme HydE. Nat.Chem. (2016)
- Release Date
- 2016-04-06
- Peptides
- [FeFe] hydrogenase maturase subunit HydE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A