SMTL ID : 5ff9.1

Noroxomaritidine/Norcraugsodine Reductase in Complex with NADP+ and tyramine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-tetramer

Ligands

3 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 29 residues within 4Å: Chain A: G.18, T.20, K.21, G.22, I.23, S.42, R.43, N.44, C.67, D.68, V.69, S.70, N.96, A.97, G.98, V.119, I.146, S.147, S.148, Y.161, K.165, P.191, G.192, A.193, I.194, T.196, P.197, G.198, T.199 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.18, A:T.20, A:K.21, A:I.23, A:S.42, A:R.43, A:N.44, A:D.68, A:V.69, A:S.70, A:N.96, A:Y.161, A:K.165, A:I.194, A:I.194, A:T.196, A:T.196, A:G.198 Water bridges: A:G.24, A:N.96 Salt bridges: A:R.43 NAP.3: 32 residues within 4Å: Chain B: G.18, G.19, T.20, K.21, G.22, I.23, S.42, R.43, N.44, E.47, C.67, D.68, V.69, S.70, N.96, A.97, G.98, V.119, I.146, S.147, S.148, Y.161, K.165, P.191, G.192, A.193, I.194, T.196, P.197, G.198, T.199 Ligands: AEF.4 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:P.191 Hydrogen bonds: B:G.18, B:T.20, B:K.21, B:I.23, B:S.42, B:R.43, B:N.44, B:D.68, B:V.69, B:S.70, B:N.96, B:K.165, B:I.194, B:I.194, B:T.196, B:T.196, B:G.198 Water bridges: B:G.24, B:S.42, B:S.42, B:R.43, B:S.70, B:S.70, B:N.96, B:G.98, B:G.99 Salt bridges: B:K.21, B:R.43 NAP.8: 30 residues within 4Å: Chain C: G.18, T.20, K.21, G.22, I.23, S.42, R.43, N.44, E.47, C.67, D.68, V.69, S.70, N.96, A.97, G.98, V.119, I.146, S.147, S.148, Y.161, K.165, P.191, G.192, A.193, I.194, T.196, P.197, G.198, T.199 23 PLIP interactions: 23 interactions with chain C Hydrogen bonds: C:G.18, C:T.20, C:T.20, C:K.21, C:I.23, C:S.42, C:R.43, C:R.43, C:N.44, C:D.68, C:V.69, C:S.70, C:N.96, C:Y.161, C:K.165, C:I.194, C:I.194, C:T.196, C:G.198 Water bridges: C:G.24, C:N.96 Salt bridges: C:K.21, C:R.43

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: A.151, N.169, R.173, V.246 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.169 Water bridges: A:G.166, A:R.173 Salt bridges: A:R.173 SO4.5: 4 residues within 4Å: Chain B: R.72 Chain D: F.108, T.109, A.110 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D Water bridges: B:H.126, B:Q.129, D:E.111 Salt bridges: B:R.72 Hydrogen bonds: D:A.110 SO4.6: 6 residues within 4Å: Chain B: A.151, Q.152, N.169, R.173, V.246 Ligands: SO4.11 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.169 Water bridges: B:R.173 Salt bridges: B:R.173 SO4.7: 2 residues within 4Å: Chain B: R.43, F.115 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.43, B:R.43 Salt bridges: B:R.43 SO4.10: 4 residues within 4Å: Chain D: G.18, S.42, R.43, A.97 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.42, D:R.43 Water bridges: D:G.18 Salt bridges: D:R.43 SO4.11: 5 residues within 4Å: Chain D: Q.152, N.169, R.173, V.246 Ligands: SO4.6 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:Q.152, D:N.169 Water bridges: D:Q.170, D:R.173 Salt bridges: D:R.173

2 x AEF: 4-(2-aminoethyl)phenol(Non-covalent)

AEF.4: 8 residues within 4Å: Chain B: Y.100, S.148, I.155, H.158, Y.161, A.193, E.212 Ligands: NAP.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.193 Hydrogen bonds: B:Y.161, B:A.193 pi-Stacking: B:H.158 AEF.9: 11 residues within 4Å: Chain D: Y.100, S.148, C.149, C.150, I.155, H.158, Y.161, G.192, A.193, E.212, R.253 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:I.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kilgore, M.B. et al., Identification of a Noroxomaritidine Reductase with Amaryllidaceae Alkaloid Biosynthesis Related Activities. J.Biol.Chem. (2016)

Release Date

2016-06-08

Peptides

Noroxomaritidine/Norcraugsodine Reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Noroxomaritidine/Norcraugsodine Reductase

Related Entries With Identical Sequence