SMTL ID : 5fi3.1

HETEROYOHIMBINE SYNTHASE THAS1 FROM CATHARANTHUS ROSEUS - COMPLEX WITH NADP+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 25 residues within 4Å: Chain A: Q.56, Y.57, E.60, C.163, T.167, G.188, L.189, G.190, G.191, L.192, S.211, S.212, K.216, T.251, I.252, P.253, G.254, L.274, G.275, A.276, S.298, T.299, A.300, S.340, R.345 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:T.167 Hydrogen bonds: A:Q.56, A:Q.56, A:E.60, A:L.189, A:G.191, A:L.192, A:S.212, A:L.274, A:A.276, A:A.300, A:S.340, A:S.340, A:S.340 Water bridges: A:G.190, A:G.193, A:I.210, A:S.212, A:K.216, A:K.216, A:N.255, A:N.255, A:S.340, A:R.345, A:R.345 Salt bridges: A:K.216 NAP.6: 26 residues within 4Å: Chain A: L.289 Chain B: Q.56, Y.57, E.60, C.163, T.167, G.188, L.189, G.190, G.191, L.192, S.211, S.212, K.216, T.251, I.252, P.253, G.254, L.274, G.275, A.276, S.298, T.299, A.300, S.340, R.345 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:T.167 Hydrogen bonds: B:Q.56, B:Q.56, B:E.60, B:L.189, B:G.191, B:L.192, B:S.212, B:L.274, B:A.276, B:A.300, B:S.340, B:S.340, B:S.340 Water bridges: B:G.190, B:G.193, B:K.216, B:K.216, B:K.216, B:N.255, B:N.255, B:N.255, B:R.345, B:R.345, B:R.345, B:R.345, B:R.345 Salt bridges: B:K.216, B:R.345

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.55, H.77, E.78, C.163, R.345 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.55, A:H.77, A:E.78, A:C.163 ZN.3: 5 residues within 4Å: Chain A: C.108, G.109, C.111, C.114, C.122 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.108, A:C.111, A:C.114, A:C.122 ZN.5: 5 residues within 4Å: Chain B: C.55, H.77, E.78, C.163, R.345 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.55, B:H.77, B:E.78, B:C.163 ZN.7: 5 residues within 4Å: Chain B: C.108, G.109, C.111, C.114, C.122 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.108, B:C.111, B:C.114, B:C.122

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: S.232, I.252, H.256, S.257, P.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.232, A:S.257 Water bridges: A:S.232 EDO.8: 6 residues within 4Å: Chain B: L.21, F.30, I.327, D.328, V.330, N.331 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.328, B:N.331 Water bridges: B:T.332

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stavrinides, A. et al., Structural investigation of heteroyohimbine alkaloid synthesis reveals active site elements that control stereoselectivity. Nat Commun (2016)

Release Date

2016-07-27

Peptides

Tetrahydroalstonine synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tetrahydroalstonine synthase

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