SMTL ID : 5fih.1

SACCHAROMYCES CEREVISIAE GAS2P (E176Q MUTANT) IN COMPLEX WITH LAMINARITETRAOSE AND LAMINARIPENTAOSE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GLC- BGC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose

GLC-BGC-BGC-BGC.1: 21 residues within 4Å: Chain A: Q.62, Y.107, D.132, S.134, E.135, P.136, S.139, I.140, N.141, R.142, N.175, Q.176, V.177, N.242, Y.244, E.275, Y.307, M.308, N.314, Y.316 Ligands: BGC-BGC-GLC-BGC-BGC.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.142, A:Y.107, A:N.175, A:Q.176, A:N.242, A:Y.244, A:N.314, A:Y.316 Water bridges: A:S.134, A:S.134, A:N.141, A:R.142, A:R.142, A:N.175

1 x BGC- BGC- GLC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose

BGC-BGC-GLC-BGC-BGC.2: 14 residues within 4Å: Chain A: Q.176, N.216, D.217, D.218, A.219, R.222, N.242, E.245, C.247, T.254, S.255, R.260, L.280 Ligands: GLC-BGC-BGC-BGC.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.176, A:Q.176, A:N.242, A:D.217, A:D.217, A:A.219, A:R.222 Water bridges: A:N.216, A:D.217, A:Y.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raich, L. et al., A Trapped Covalent Intermediate of a Glycoside Hydrolase on the Pathway to Transglycosylation. Insights from Experiments and Quantum Mechanics/Molecular Mechanics Simulations. J. Am. Chem. Soc. (2016)

Release Date

2016-02-17

Peptides

1,3-BETA-GLUCANOSYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1,3-BETA-GLUCANOSYLTRANSFERASE