SMTL ID : 5fiw.1 (1 other biounit)

CRYSTAL STRUCTURE OF HUMAN MYELOPEROXIDASE AT 1.7 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC.1: 5 residues within 4Å: Chain B: N.205, S.207, V.208, R.392 Ligands: BMA.9 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.208 Water bridges: B:K.393, B:S.207

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: R.31, W.32 Chain B: N.214, V.215, W.324 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: R.270, I.431, T.432, T.433 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: N.88, Q.89, P.100, F.101 Ligand excluded by PLIP

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.3: 23 residues within 4Å: Chain A: M.87, G.90, Q.91, D.94, D.98, F.99, T.100 Chain B: R.127, E.130, M.131, Y.184, T.217, F.220, R.221, G.223, H.224, I.227, F.253, L.294, F.295, L.305, L.308, R.312 21 PLIP interactions: 15 interactions with chain B, 6 interactions with chain A, Hydrophobic interactions: B:E.130, B:R.221, B:F.253, B:L.294, B:F.295, B:L.305, B:L.305, A:Q.91, A:Q.91 Water bridges: B:R.221, B:R.221, B:R.221, B:R.221 Salt bridges: B:R.127, B:R.221, B:R.312 Metal complexes: B:H.224 Hydrogen bonds: A:D.98, A:D.98, A:T.100, A:T.100

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: D.96 Chain B: T.56, F.58, D.60, S.62 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Metal complexes: B:T.56, B:T.56, B:F.58, B:S.62, A:D.96

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 6 residues within 4Å: Chain B: N.77, N.80, L.84, A.86, V.87, Q.89 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.80, B:V.87, B:Q.89, B:Q.89 Water bridges: B:N.77 NAG.8: 5 residues within 4Å: Chain B: N.113, S.115, A.116, W.257, L.261 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.113 Water bridges: B:R.258

1 x BMA: beta-D-mannopyranose(Non-functional Binders)

BMA.9: 1 residues within 4Å: Ligands: NAG-NAG-BMA-MAN-FUC.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonnefond, L. et al., Crystal Structure of Human Myeloperoxidase at 1.7 Angstroms Resolution. To be Published

Release Date

2015-10-14

Peptides

MYELOPEROXIDASE: A
MYELOPEROXIDASE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

MYELOPEROXIDASE

MYELOPEROXIDASE

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