- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.2: 19 residues within 4Å:- Chain A: N.105, S.125, E.126, K.129, W.132
- Chain B: W.132, Q.135, I.136, D.153, Y.185, W.193, I.194, K.195, G.197, Y.198, Q.202
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.18, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.18, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.18
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:W.132, B:K.195, A:E.126, A:E.126, B:Q.135
- Water bridges: B:S.134, B:S.134, B:Q.135, B:Q.135, B:W.193, B:Y.198, B:Y.198
NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.18: 19 residues within 4Å:- Chain A: W.132, Q.135, I.136, D.153, Y.185, W.193, I.194, K.195, G.197, Y.198, Q.202
- Chain B: N.105, S.125, E.126, K.129, W.132
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.2, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.2, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.2
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:W.132, A:K.195, A:Q.135, B:E.126, B:E.126
- Water bridges: A:S.134, A:S.134, A:Q.135, A:Q.135, A:W.193, A:Y.198, A:Y.198
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x GLC- FRU- FRU: beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
GLC-FRU-FRU.4: 12 residues within 4Å:- Chain A: W.75, N.77, Q.95, W.103, I.106, F.143, D.144, R.218, D.219, E.301, T.302, Y.374
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.77, A:W.103, A:D.144, A:D.219, A:E.301
- Water bridges: A:A.78, A:N.77
GLC-FRU-FRU.20: 12 residues within 4Å:- Chain B: W.75, N.77, Q.95, W.103, I.106, F.143, D.144, R.218, D.219, E.301, T.302, Y.374
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.77, B:W.103, B:D.144, B:D.219, B:E.301
- Water bridges: B:A.78, B:N.77
- 24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 3 residues within 4Å:- Chain A: N.50, T.52, L.53
Ligand excluded by PLIPNAG.6: 1 residues within 4Å:- Chain A: N.123
Ligand excluded by PLIPNAG.7: 3 residues within 4Å:- Chain A: N.173, T.212, N.213
Ligand excluded by PLIPNAG.8: 2 residues within 4Å:- Chain A: I.238, N.240
Ligand excluded by PLIPNAG.9: 2 residues within 4Å:- Chain A: N.317, S.319
Ligand excluded by PLIPNAG.10: 7 residues within 4Å:- Chain A: E.211, Y.276, L.277, P.279, R.353, N.355, S.357
Ligand excluded by PLIPNAG.11: 4 residues within 4Å:- Chain A: P.427, F.433, N.442, G.446
Ligand excluded by PLIPNAG.12: 8 residues within 4Å:- Chain A: D.115, T.117, S.118, A.464, A.465, G.468, N.469, V.633
Ligand excluded by PLIPNAG.13: 3 residues within 4Å:- Chain A: M.479, N.481, S.483
Ligand excluded by PLIPNAG.14: 6 residues within 4Å:- Chain A: E.291, D.532, S.535, N.537, L.557, K.559
Ligand excluded by PLIPNAG.15: 3 residues within 4Å:- Chain A: T.543, K.549, N.553
Ligand excluded by PLIPNAG.16: 5 residues within 4Å:- Chain A: N.56, A.57, T.58, N.642, S.644
Ligand excluded by PLIPNAG.21: 3 residues within 4Å:- Chain B: N.50, T.52, L.53
Ligand excluded by PLIPNAG.22: 1 residues within 4Å:- Chain B: N.123
Ligand excluded by PLIPNAG.23: 3 residues within 4Å:- Chain B: N.173, T.212, N.213
Ligand excluded by PLIPNAG.24: 2 residues within 4Å:- Chain B: I.238, N.240
Ligand excluded by PLIPNAG.25: 2 residues within 4Å:- Chain B: N.317, S.319
Ligand excluded by PLIPNAG.26: 7 residues within 4Å:- Chain B: E.211, Y.276, L.277, P.279, R.353, N.355, S.357
Ligand excluded by PLIPNAG.27: 4 residues within 4Å:- Chain B: P.427, F.433, N.442, G.446
Ligand excluded by PLIPNAG.28: 8 residues within 4Å:- Chain B: D.115, T.117, S.118, A.464, A.465, G.468, N.469, V.633
Ligand excluded by PLIPNAG.29: 3 residues within 4Å:- Chain B: M.479, N.481, S.483
Ligand excluded by PLIPNAG.30: 6 residues within 4Å:- Chain B: E.291, D.532, S.535, N.537, L.557, K.559
Ligand excluded by PLIPNAG.31: 3 residues within 4Å:- Chain B: T.543, K.549, N.553
Ligand excluded by PLIPNAG.32: 5 residues within 4Å:- Chain B: N.56, A.57, T.58, N.642, S.644
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Analysis of Beta-Fructofuranosidase from Xanthophyllomyces Dendrorhous Reveals Unique Features and the Crucial Role of N-Glycosylation in Oligomerization and Activity. J.Biol.Chem. (2016)
- Release Date
- 2016-02-10
- Peptides
- BETA-FRUCTOFURANOSIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x GLC- FRU- FRU: beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
- 24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Analysis of Beta-Fructofuranosidase from Xanthophyllomyces Dendrorhous Reveals Unique Features and the Crucial Role of N-Glycosylation in Oligomerization and Activity. J.Biol.Chem. (2016)
- Release Date
- 2016-02-10
- Peptides
- BETA-FRUCTOFURANOSIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B