SMTL ID : 5fpo.1

Structure of Bacterial DNA Ligase with small-molecule ligand 1H- indazol-7-amine (AT4213) in an alternate binding site.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

3 x 10L: 1H-indazol-7-amine(Non-covalent)

10L.1: 8 residues within 4Å: Chain A: L.80, L.82, E.110, K.112, E.167, Y.219, V.281, K.283 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.82 Hydrogen bonds: A:E.167 pi-Stacking: A:Y.219, A:Y.219 10L.2: 11 residues within 4Å: Chain A: N.16, S.19, Y.20, V.24, R.61, H.150, A.151, I.152, P.153, G.243, T.245 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.153 Hydrogen bonds: A:R.61, A:H.150, A:H.150 pi-Stacking: A:Y.20 10L.3: 7 residues within 4Å: Chain A: R.172, F.175, L.176, A.191, N.192, P.193, D.276 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.276, A:D.276 pi-Stacking: A:F.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ludlow, R.F. et al., Detection of Secondary Binding Sites in Proteins Using Fragment Screening. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-12-23

Peptides

DNA LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA LIGASE

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