SMTL ID : 5fqa.1

Crystal Structure of Bacillus cereus Metallo-Beta-Lactamase II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 7 residues within 4Å: Chain A: H.86, H.88, D.90, H.149, C.168 Ligands: FE.2, OH.5 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: A:H.86, A:H.88, A:H.149, OH.5, H2O.6 FE.2: 5 residues within 4Å: Chain A: D.90, C.168, H.210 Ligands: FE.1, OH.5 5 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions Metal complexes: A:D.90, A:H.210, OH.5, H2O.7, H2O.10

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: K.65, E.100, R.101 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.100, A:R.101, A:R.101 Water bridges: A:K.65

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: K.139, Q.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.160 Salt bridges: A:K.139

1 x OH: HYDROXIDE ION(Non-covalent)

OH.5: 7 residues within 4Å: Chain A: H.86, H.88, D.90, H.149, C.168 Ligands: FE.1, FE.2 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: A.87, H.88, L.114, N.118 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.87, A:N.118 Water bridges: A:K.117, A:K.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cahill, S.T. et al., Use of ferrous iron by metallo-beta-lactamases. J. Inorg. Biochem. (2016)

Release Date

2016-08-10

Peptides

BETA-LACTAMASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-LACTAMASE 2

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