SMTL ID : 5fry.1

crystal structure of the phenol-responsive sensory domain of the transcription activator PoxR with 3,5-dimethylphenol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.151, E.174, C.177, C.185 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.151, A:E.174, A:C.177, A:C.185 ZN.3: 4 residues within 4Å: Chain B: C.151, E.174, C.177, C.185 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.151, B:E.174, B:C.177, B:C.185

2 x ERH: 3,4-DIMETHYLPHENOL

ERH.2: 12 residues within 4Å: Chain A: G.98, P.99, H.102, V.110, F.128, W.130, Y.157, A.158, Y.161, T.162, Y.172, I.187 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.99, A:V.110, A:F.128, A:Y.157, A:A.158, A:Y.161, A:I.187 pi-Stacking: A:F.128 ERH.4: 13 residues within 4Å: Chain B: G.98, P.99, H.102, V.108, V.110, F.128, W.130, Y.157, A.158, Y.161, T.162, Y.172, I.187 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:P.99, B:H.102, B:V.110, B:F.128, B:F.128, B:Y.157, B:Y.157, B:A.158, B:Y.161, B:Y.172, B:I.187 Hydrogen bonds: B:H.102, B:W.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patil, V.V. et al., Structural Analysis of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr. Structure (2016)

Release Date

2016-05-18

Peptides

POSITIVE PHENOL-DEGRADATIVE GENE REGULATOR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

POSITIVE PHENOL-DEGRADATIVE GENE REGULATOR

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