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SMTL ID : 5ft8.4
(3 other biounits)
Crystal structure of the complex between the cysteine desulfurase CsdA and the sulfur-acceptor CsdE in the persulfurated state at 2.50 Angstroem resolution
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
hetero-2-2-mer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.1:
12 residues within 4Å:
Chain A:
T.92
,
T.93
,
H.121
,
A.123
,
N.173
,
D.198
,
A.200
,
Q.201
,
S.221
,
H.223
,
K.224
Chain C:
T.275
16
PLIP interactions
:
13 interactions with chain A
,
3 interactions with chain C
Hydrophobic interactions:
A:H.121
,
A:A.200
,
A:K.224
Hydrogen bonds:
A:T.92
,
A:T.93
,
A:T.93
,
A:T.93
,
A:Q.201
,
A:S.221
,
A:K.224
,
C:T.275
,
C:T.275
,
C:T.275
Salt bridges:
A:H.223
,
A:K.224
pi-Stacking:
A:H.121
PLP.3:
12 residues within 4Å:
Chain A:
T.275
Chain C:
T.92
,
T.93
,
H.121
,
A.123
,
N.173
,
D.198
,
A.200
,
Q.201
,
S.221
,
H.223
,
K.224
16
PLIP interactions
:
2 interactions with chain A
,
14 interactions with chain C
Hydrogen bonds:
A:T.275
,
A:T.275
,
C:T.92
,
C:T.93
,
C:T.93
,
C:T.93
,
C:Q.201
,
C:S.221
,
C:S.221
,
C:K.224
Hydrophobic interactions:
C:H.121
,
C:A.200
,
C:K.224
Salt bridges:
C:H.223
,
C:K.224
pi-Stacking:
C:H.121
1 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.2:
1 residues within 4Å:
Chain A:
D.312
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Fernandez, F.J. et al., Mechanism of Sulfur Transfer Across Protein-Protein Interfaces: The Cysteine Desulfurase Model System. Acs Catalysis (2016)
Release Date
2016-11-23
Peptides
Cysteine desulfurase CsdA:
A
C
Sulfur acceptor protein CsdE:
B
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
M
C
O
B
c
D
e
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Secondary Structure
None
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Cysteine desulfurase CsdA
Toggle Identical (AC)
Sulfur acceptor protein CsdE
Related Entries With Identical Sequence
5ft8.1
|
5ft8.2
|
5ft8.3
|
5nq6.1
|
5nq6.2
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