SMTL ID : 5fu8.2 (1 other biounit)

Pseudomonas aeruginosa RmlA in complex with allosteric inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x DH5: N-(6-amino-1-(4-bromo-3-methylbenzyl)-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-N-methylbenzenesulfonamide(Non-covalent)

DH5.1: 16 residues within 4Å: Chain A: S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269, Q.270 Chain C: R.229 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:L.55, A:L.55, A:A.261, A:I.266, A:R.269 Hydrogen bonds: A:G.125, A:K.259, A:A.261 Water bridges: A:F.128, A:C.262 pi-Cation interactions: C:R.229 DH5.4: 17 residues within 4Å: Chain B: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269, Q.270 Chain D: R.229 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:L.55, B:L.55, B:H.129, B:A.261, B:I.266, B:R.269 Hydrogen bonds: B:K.259, B:A.261 Water bridges: B:F.128, B:C.262 Halogen bonds: B:Q.270 pi-Cation interactions: D:R.229 DH5.7: 16 residues within 4Å: Chain A: R.229 Chain C: S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269, Q.270 11 PLIP interactions: 10 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:L.55, C:L.55, C:A.261, C:I.266, C:R.269 Hydrogen bonds: C:G.125, C:K.259, C:A.261 Water bridges: C:F.128, C:C.262 pi-Cation interactions: A:R.229 DH5.10: 17 residues within 4Å: Chain B: R.229 Chain D: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269, Q.270 13 PLIP interactions: 10 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:L.55, D:L.55, D:H.129, D:A.261, D:I.266, D:R.269 Hydrogen bonds: D:K.259, D:A.261 Water bridges: D:F.128, B:R.229, B:R.229 Halogen bonds: D:Q.270 pi-Cation interactions: B:R.229

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 9 residues within 4Å: Chain A: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226 Chain C: Y.303 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.166, A:V.224, A:V.224 MES.5: 7 residues within 4Å: Chain B: F.160, G.164, K.165, A.166, V.224, I.226 Chain D: Y.303 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.166, B:V.224, B:V.224 MES.8: 9 residues within 4Å: Chain A: Y.303 Chain C: F.160, G.164, K.165, A.166, L.222, S.223, V.224, I.226 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:A.166, C:V.224, C:V.224 MES.11: 7 residues within 4Å: Chain B: Y.303 Chain D: F.160, G.164, K.165, A.166, V.224, I.226 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:A.166, D:V.224, D:V.224

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: H.126 Chain C: G.228, R.229, G.230 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: H.126 Chain D: G.228, R.229, G.230 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: G.228, R.229, G.230 Chain C: H.126 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain B: G.228, R.229, G.230 Chain D: H.126 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tran, F. et al., Allosteric Competitive Inhibitors of the Glucose-1-Phosphate Thymidylyltransferase (Rmla) from Pseudomonas Aeruginosa. To be Published

Release Date

2017-02-22

Peptides

GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE

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