SMTL ID : 5fx8.1

Complete structure of manganese lipoxygenase of Gaeumannomyces graminis and partial structure of zonadhesin of Komagataella pastoris

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-1-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: G.153, S.156, N.157, F.591, G.595, P.601 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: N.106, Q.543, D.546 Chain B: R.527 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.546 NAG-NAG.4: 4 residues within 4Å: Chain B: Q.56, G.57, N.60, Y.434 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-NAG.2: 4 residues within 4Å: Chain A: Q.56, G.57, N.60, Y.434 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.5: 4 residues within 4Å: Chain B: N.106, A.542, Q.543, D.546 No protein-ligand interaction detected (PLIP)

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.6: 5 residues within 4Å: Chain A: H.290, H.294, H.478, N.482, V.618 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.290, A:H.294, A:H.478, A:V.618, H2O.3 MN.9: 5 residues within 4Å: Chain B: H.290, H.294, H.478, N.482, V.618 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.290, B:H.294, B:H.478, B:V.618, H2O.7

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 2 residues within 4Å: Chain A: E.87, N.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.87 NAG.8: 9 residues within 4Å: Chain A: Y.112, A.115, N.116, F.119, V.530, E.531 Chain B: Y.112, F.342, R.538 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.119, A:V.530 Hydrogen bonds: A:N.116, A:E.531, B:R.101, B:R.538 Water bridges: B:T.108 NAG.10: 5 residues within 4Å: Chain A: P.227 Chain B: R.65, L.69, E.87, N.91 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.69, B:E.87 Hydrogen bonds: B:R.65, B:E.87, B:E.87, B:E.87, B:N.91 NAG.11: 3 residues within 4Å: Chain A: R.113, E.144 Chain B: N.116 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.116 NAG.12: 6 residues within 4Å: Chain B: G.153, S.156, N.157, F.591, G.595, P.601 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.601 Hydrogen bonds: B:S.156, B:G.595

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Crystal Structure of Linoleate 13R-Manganese Lipoxygenase and an Adhesion Protein. J.Lipid Res. (2016)

Release Date

2016-06-22

Peptides

LINOLEATE 11-LIPOXYGENASE: AB
ZONADHESIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
U

LINOLEATE 11-LIPOXYGENASE

ZONADHESIN