SMTL ID : 5g20.1

Leishmania major N-myristoyltransferase in complex with a quinoline inhibitor (compound 19).

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 8 residues within 4Å: Chain A: V.161, L.165, R.166, E.167, K.168, R.169, L.170 Ligands: MYA.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:L.165

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.2: 33 residues within 4Å: Chain A: H.2, A.3, F.4, W.5, N.69, Y.70, V.71, I.156, N.157, F.158, L.159, C.160, V.161, R.166, E.167, K.168, R.169, L.170, A.171, P.172, I.175, T.179, V.182, N.183, W.188, Q.189, A.190, Y.192, T.193, V.196, L.198, Y.394 Ligands: MG.1 39 PLIP interactions: 39 interactions with chain A Hydrophobic interactions: A:W.5, A:W.5, A:Y.70, A:V.71, A:I.156, A:I.156, A:L.159, A:L.159, A:V.161, A:A.171, A:I.175, A:I.175, A:V.182, A:A.190, A:Y.192, A:Y.192, A:Y.394 Hydrogen bonds: A:A.3, A:F.4, A:W.5, A:Y.70, A:F.158, A:L.159, A:L.159, A:V.161, A:R.166, A:R.166, A:E.167, A:R.169, A:L.170, A:A.171 Water bridges: A:H.2, A:H.2, A:E.167, A:R.169, A:R.169 Salt bridges: A:H.2, A:R.169, A:R.169

1 x QBY: 6-(BENZYLOXY)-4-(ETHYLSULFANYL)-3-[(MORPHOLIN-4-YL)(Non-covalent)

QBY.3: 14 residues within 4Å: Chain A: V.71, E.72, D.73, F.78, R.79, F.80, G.195, Y.207, H.209, R.221, S.320, L.331, Y.335, N.366 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.71, A:F.78, A:Y.207, A:Y.207 Hydrogen bonds: A:S.320, A:N.366 Water bridges: A:R.221 pi-Stacking: A:F.80

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 7 residues within 4Å: Chain A: F.80, Y.82, Y.207, I.318, Y.335, M.410, L.411 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goncalves, V. et al., Structure-guided optimization of quinoline inhibitors of Plasmodium N-myristoyltransferase. Medchemcomm (2017)

Release Date

2017-02-15

Peptides

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE

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