SMTL ID : 5g2t.1 (3 other biounits)

BT1596 in complex with its substrate 4,5 unsaturated uronic acid alpha 1,4 D-Glucosamine-2-N, 6-O-disulfate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SGN- UAP: 4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose(Non-covalent)

SGN-UAP.1: 15 residues within 4Å: Chain A: D.32, H.33, L.71, S.72, N.93, K.125, H.127, H.188, C.191, R.237, R.238, H.292, K.304, E.386, Y.387 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.237, A:H.33, A:S.72, A:S.72, A:N.93 Salt bridges: A:K.125, A:H.127, A:H.188, A:R.237, A:K.125, A:H.127, A:H.188, A:H.188, A:H.188, A:R.237, A:R.238, A:H.292, A:K.304, A:K.304, A:K.304 Water bridges: A:R.237, A:R.238, A:R.238

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.233, C.234, H.470, H.477 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.233, A:C.234, A:H.470, A:H.477

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: F.145, T.146, V.152, F.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.145 Water bridges: A:D.147 EDO.4: 6 residues within 4Å: Chain A: H.333, L.334, L.335, S.375, H.376 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.335, A:L.335, A:S.375 EDO.5: 8 residues within 4Å: Chain A: L.335, T.336, D.341, I.361, L.363, S.375, H.376 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.341, A:H.376 EDO.6: 5 residues within 4Å: Chain A: Y.276, T.278, P.279, G.281, R.282 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.281, A:R.282 EDO.7: 3 residues within 4Å: Chain A: M.83, Q.87, E.357 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.82, A:E.357 EDO.8: 8 residues within 4Å: Chain A: V.219, E.220, D.221, N.224, I.225, R.425, K.426, N.427 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.220, A:D.221, A:N.427 EDO.9: 3 residues within 4Å: Chain A: L.272, K.273, Y.276 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.58 EDO.10: 3 residues within 4Å: Chain A: R.282, G.321, P.322 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.276, A:G.281, A:T.284

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 6 residues within 4Å: Chain A: S.385, E.386, Y.387, E.388, Y.389, V.390 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cartmell, A. et al., How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-05-24

Peptides

2-O GLYCOSAMINOGLYCAN SULFATASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2-O GLYCOSAMINOGLYCAN SULFATASE

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