SMTL ID : 5g4a.1 (1 other biounit)

AadA in complex with ATP and magnesium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: V.97, E.151, R.152, L.153, F.154, T.155 No protein-ligand interaction detected (PLIP)

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: L.216, P.217 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: L.162, G.200, F.261 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.200 EDO.4: 1 residues within 4Å: Chain A: G.78 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: G.40, G.41, L.42 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 4 residues within 4Å: Chain A: D.47, D.49 Ligands: MG.7, ATP.8 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.47, A:D.49, H2O.2 MG.7: 7 residues within 4Å: Chain A: D.47, D.49, E.87 Ligands: MG.6, ATP.8, UNX.10, UNX.11 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.47, A:D.49, A:E.87, H2O.4

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.8: 21 residues within 4Å: Chain A: G.35, S.36, G.41, S.46, D.47, D.49, D.130, L.133, L.134, Q.137, L.166, T.189, R.192, I.193, T.196, F.202, K.205, Y.231 Ligands: MG.6, MG.7, UNX.11 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:S.36, A:S.36, A:S.46, A:S.46, A:D.47, A:Q.137, A:Q.137, A:T.196, A:Y.231 Water bridges: A:A.37, A:G.40, A:G.40, A:D.47, A:D.47, A:H.185, A:R.192, A:R.192, A:R.192, A:R.192, A:R.192, A:R.192, A:T.196, A:T.196, A:K.205 Salt bridges: A:R.192, A:K.205, A:K.205, A:K.205

3 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.9: 3 residues within 4Å: Chain A: W.112 Ligands: UNX.10, UNX.11 No protein-ligand interaction detected (PLIP) UNX.10: 4 residues within 4Å: Chain A: E.87 Ligands: MG.7, UNX.9, UNX.11 No protein-ligand interaction detected (PLIP) UNX.11: 5 residues within 4Å: Chain A: E.87 Ligands: MG.7, ATP.8, UNX.9, UNX.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stern, A.L. et al., Structural mechanism of AadA, a dual-specificity aminoglycoside adenylyltransferase fromSalmonella enterica. J.Biol.Chem. (2018)

Release Date

2017-11-29

Peptides

Aminoglycoside (3'') (9) adenylyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aminoglycoside (3'') (9) adenylyltransferase

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