SMTL ID : 5g4j.1

Phospholyase A1RDF1 from Arthrobacter in complex with phosphoethanolamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-dimer

Ligands

2 x EXT: {5-hydroxy-6-methyl-4-[(E)-{[2-(phosphonooxy)ethyl]imino}methyl]pyridin-3-yl}methyl dihydrogen phosphate(Non-covalent)

EXT.1: 16 residues within 4Å: Chain A: Y.61, S.119, G.120, S.121, N.124, Y.147, H.148, D.251, V.253, Q.254, K.281, K.412, R.414 Chain B: R.90, F.309, T.311 25 PLIP interactions: 19 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:V.253, A:Q.254 Hydrogen bonds: A:Y.61, A:Y.61, A:Y.61, A:G.120, A:S.121, A:N.124, A:Q.254, A:K.281, B:T.311, B:T.311 Water bridges: A:N.150, A:N.150, A:N.150, A:K.412, A:K.412, A:R.414, B:N.118, B:N.310, B:F.312 Salt bridges: A:K.281, A:K.412, A:R.414, B:R.90 EXT.4: 16 residues within 4Å: Chain A: R.90, F.309, T.311 Chain B: Y.61, S.119, G.120, S.121, N.124, Y.147, H.148, D.251, V.253, Q.254, K.281, K.412, R.414 25 PLIP interactions: 20 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:V.253, B:Q.254 Hydrogen bonds: B:Y.61, B:Y.61, B:Y.61, B:S.119, B:G.120, B:S.121, B:N.124, B:Q.254, B:K.281, A:T.311, A:T.311 Water bridges: B:N.150, B:N.150, B:N.150, B:N.150, B:R.414, A:R.90, A:F.312 Salt bridges: B:K.281, B:K.281, B:K.412, B:R.414, A:R.90

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: G.232, E.235, F.270, N.271 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.232, A:I.234, A:E.235, A:N.271 Water bridges: A:Y.233 NA.3: 3 residues within 4Å: Chain A: A.353, S.356, V.359 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.359, A:V.359 NA.5: 5 residues within 4Å: Chain B: G.232, I.234, E.235, F.270, N.271 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.232, B:I.234, B:E.235, B:N.271 Water bridges: B:Y.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuetos, A. et al., Structural Basis for Phospholyase Activity of a Class III Transaminase Homologue. Chembiochem (2016)

Release Date

2016-10-19

Peptides

PUTATIVE AMINOTRANSFERASE CLASS III PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PUTATIVE AMINOTRANSFERASE CLASS III PROTEIN

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