SMTL ID : 5g4l.1

Phloroglucinol reductase from Clostridium sp. with bound NADPH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 25 residues within 4Å: Chain A: T.48, G.49, A.50, L.51, G.70, R.71, N.72, P.97, T.123, H.124, G.125, F.126, Y.142, A.146, D.147, V.174, T.175, S.176, Y.189, K.193, P.220, T.221, V.222, F.223, D.226 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:T.48, A:T.48, A:T.48, A:A.50, A:L.51, A:R.71, A:N.72, A:H.124, A:G.125, A:Y.142, A:Y.142, A:K.193, A:F.223, A:D.226, A:D.226 Water bridges: A:G.52, A:N.72, A:G.125 Salt bridges: A:R.71 pi-Cation interactions: A:R.71, A:R.71 NDP.2: 25 residues within 4Å: Chain B: T.48, G.49, A.50, L.51, G.70, R.71, N.72, P.97, T.123, H.124, G.125, F.126, Y.142, A.146, D.147, V.174, T.175, S.176, Y.189, K.193, P.220, T.221, V.222, F.223, D.226 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:T.48, B:T.48, B:T.48, B:A.50, B:L.51, B:R.71, B:R.71, B:N.72, B:H.124, B:G.125, B:Y.142, B:Y.189, B:K.193, B:F.223, B:D.226 Water bridges: B:G.52, B:G.125, B:F.126 Salt bridges: B:R.71 pi-Cation interactions: B:R.71, B:R.71 NDP.3: 25 residues within 4Å: Chain C: T.48, G.49, A.50, L.51, G.70, R.71, N.72, P.97, T.123, H.124, G.125, F.126, Y.142, A.146, D.147, V.174, T.175, S.176, Y.189, K.193, P.220, T.221, V.222, F.223, D.226 21 PLIP interactions: 21 interactions with chain C Hydrogen bonds: C:T.48, C:T.48, C:T.48, C:A.50, C:L.51, C:R.71, C:N.72, C:H.124, C:G.125, C:Y.142, C:Y.142, C:K.193, C:F.223, C:D.226, C:D.226 Water bridges: C:G.52, C:N.72, C:G.125 Salt bridges: C:R.71 pi-Cation interactions: C:R.71, C:R.71 NDP.4: 25 residues within 4Å: Chain D: T.48, G.49, A.50, L.51, G.70, R.71, N.72, P.97, T.123, H.124, G.125, F.126, Y.142, A.146, D.147, V.174, T.175, S.176, Y.189, K.193, P.220, T.221, V.222, F.223, D.226 21 PLIP interactions: 21 interactions with chain D Hydrogen bonds: D:T.48, D:T.48, D:T.48, D:A.50, D:L.51, D:R.71, D:R.71, D:N.72, D:H.124, D:G.125, D:Y.142, D:Y.189, D:K.193, D:F.223, D:D.226 Water bridges: D:G.52, D:G.125, D:F.126 Salt bridges: D:R.71 pi-Cation interactions: D:R.71, D:R.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Conradt, D. et al., Biocatalytic Properties and Structural Analysis of Phloroglucinol Reductases. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2016-12-07

Peptides

OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY PROTEIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY PROTEIN

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