SMTL ID : 5g6s.2 (3 other biounits)

Imine reductase from Aspergillus oryzae in complex with NADP(H) and (R)-rasagiline

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 24 residues within 4Å: Chain A: G.9, L.10, G.11, A.12, M.13, G.14, N.32, R.33, T.34, C.65, L.66, L.67, V.71, T.92, N.93, I.118, A.120, V.121, P.122 Chain B: G.234, S.235, N.236, M.239 Ligands: RAU.2 24 PLIP interactions: 21 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:I.118 Hydrogen bonds: A:L.10, A:G.11, A:G.11, A:A.12, A:M.13, A:G.14, A:N.32, A:N.32, A:R.33, A:R.33, A:R.33, A:T.34, A:T.34, A:L.66, A:L.67, A:N.93, B:S.235, B:N.236 Water bridges: A:L.67, B:N.236 Salt bridges: A:R.33 pi-Cation interactions: A:R.33, A:R.33 NDP.3: 25 residues within 4Å: Chain A: G.234, S.235, N.236, M.239 Chain B: G.9, L.10, G.11, A.12, M.13, G.14, N.32, R.33, T.34, K.37, C.65, L.66, L.67, V.71, T.92, N.93, I.118, A.120, V.121, P.122 Ligands: RAU.4 24 PLIP interactions: 21 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.118 Hydrogen bonds: B:L.10, B:G.11, B:G.11, B:A.12, B:M.13, B:G.14, B:N.32, B:N.32, B:T.34, B:T.34, B:L.66, B:L.67, B:N.93, A:G.234, A:N.236 Water bridges: B:K.37, B:K.37, A:N.236 Salt bridges: B:R.33, B:K.37, B:K.37 pi-Cation interactions: B:R.33, B:R.33

2 x RAU: RASAGILINE(Non-covalent)

RAU.2: 13 residues within 4Å: Chain A: V.121, L.173, M.176, Y.177, F.180 Chain B: W.210, M.214, S.235, M.239, Q.240, G.243, V.244 Ligands: NDP.1 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.121, A:L.173, A:Y.177, A:F.180, A:F.180, B:W.210 Hydrogen bonds: A:Y.177, A:Y.177 RAU.4: 12 residues within 4Å: Chain A: W.210, S.235, M.239, Q.240, G.243 Chain B: A.120, V.121, L.173, M.176, Y.177, F.180 Ligands: NDP.3 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:V.121, B:L.173, B:L.173, B:Y.177, B:F.180, B:F.180, A:W.210, A:Q.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aleku, G.A. et al., A reductive aminase from Aspergillus oryzae. Nat Chem (2017)

Release Date

2017-05-31

Peptides

IMINE REDUCTASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
F

IMINE REDUCTASE

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