SMTL ID : 5gk8.1

Structure of E.Coli fructose 1,6-bisphosphate aldolase, Acetate bound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Q.19, Y.207, P.215, S.259, L.260, N.261 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.215, A:N.261, A:N.261 Water bridges: A:Q.19, A:K.26, A:N.261 GOL.2: 5 residues within 4Å: Chain A: I.88, H.92, A.126, K.129, H.130 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.92 GOL.3: 9 residues within 4Å: Chain A: L.146, S.147, E.149, S.150, L.151, N.154, L.176, G.177, C.178 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.150, A:N.154, A:G.177 Water bridges: A:L.151 GOL.7: 7 residues within 4Å: Chain B: Q.19, Y.207, P.215, F.217, S.259, L.260, N.261 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:P.215, B:N.261, B:N.261 Water bridges: B:Q.19, B:K.26, B:K.26, B:N.261

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 4 residues within 4Å: Chain A: S.268, N.287, D.289, T.290 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.289, A:T.290 Water bridges: A:D.291 Salt bridges: B:K.326 ACT.9: 6 residues within 4Å: Chain B: G.266, S.268, N.287, I.288, D.289, T.290 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.268, B:S.268, B:D.289, B:T.290, B:T.290 Water bridges: B:D.291 Salt bridges: A:K.326

4 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: H.111, E.175, H.227, H.265 Ligands: ZN.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.175, A:E.175, A:H.227, A:H.265, H2O.1 ZN.6: 4 residues within 4Å: Chain A: H.111, H.227, H.265 Ligands: ZN.5 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.111, A:H.265, H2O.1, H2O.6, H2O.6 ZN.10: 5 residues within 4Å: Chain B: H.111, E.175, H.227, H.265 Ligands: ZN.11 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.111, B:E.175, B:E.175, B:H.227, H2O.9 ZN.11: 4 residues within 4Å: Chain B: H.111, H.227, H.265 Ligands: ZN.10 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.111, B:H.265, H2O.8, H2O.12, H2O.13

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 8 residues within 4Å: Chain A: S.89, H.92, H.93, Q.96 Chain B: S.89, H.92, H.93, Q.96 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:H.92, A:H.92, A:H.93, B:Q.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tran, T.H. et al., Structure of E.Coli fructose 1,6-bisphosphate aldolase, Acetate bound form. To Be Published

Release Date

2017-07-05

Peptides

Fructose-bisphosphate aldolase class 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fructose-bisphosphate aldolase class 2

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