- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DP6: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID(Non-covalent)
- 2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
AGS.2: 13 residues within 4Å:- Chain A: V.45, V.59, L.64, E.68, M.69, Y.72, S.94, S.106, S.107, G.110, K.190, S.194
- Ligands: DP6.1
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:E.68, A:S.94, A:S.94, A:S.107, A:S.107, A:K.190, A:S.194, A:S.194, A:S.194
- Water bridges: A:T.47, A:S.106, A:S.106, A:R.195
AGS.7: 13 residues within 4Å:- Chain B: V.45, V.59, L.64, E.68, M.69, Y.72, S.94, S.106, S.107, G.110, K.190, S.194
- Ligands: DP6.6
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:E.68, B:S.94, B:S.94, B:S.107, B:S.107, B:K.190, B:S.194, B:S.194, B:S.194
- Water bridges: B:Y.72, B:Y.72, B:S.106, B:S.106, B:R.195
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.3: 7 residues within 4Å:- Chain A: R.22, G.23, L.31, K.155, E.157, E.159, L.212
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.23, A:K.155, A:E.157
- Water bridges: A:E.157
AMP.8: 7 residues within 4Å:- Chain B: R.22, G.23, L.31, K.155, E.157, E.159, L.212
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.23, B:K.155, B:E.157
- Water bridges: B:E.159, B:E.159
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 5 residues within 4Å:- Chain A: L.104, A.105, I.182, N.285, H.287
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:L.104, A:N.285
- Water bridges: A:S.106, A:D.281
- Salt bridges: A:H.287
SO4.5: 7 residues within 4Å:- Chain A: G.148, G.149, Q.168, R.171, H.172, D.317, G.318
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.148, A:Q.168, A:H.172, A:G.318
- Salt bridges: A:H.172
SO4.9: 5 residues within 4Å:- Chain B: L.104, A.105, I.182, N.285, H.287
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.104, B:N.285
- Water bridges: B:S.106
- Salt bridges: B:H.287
SO4.10: 7 residues within 4Å:- Chain B: G.148, G.149, Q.168, R.171, H.172, D.317, G.318
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.148, B:Q.168, B:H.172, B:G.318
- Salt bridges: B:H.172
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Motoyama, K. et al., A Single Amino Acid Mutation Converts (R)-5-Diphosphomevalonate Decarboxylase into a Kinase. J. Biol. Chem. (2017)
- Release Date
- 2016-12-28
- Peptides
- Diphosphomevalonate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DP6: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID(Non-covalent)
- 2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Motoyama, K. et al., A Single Amino Acid Mutation Converts (R)-5-Diphosphomevalonate Decarboxylase into a Kinase. J. Biol. Chem. (2017)
- Release Date
- 2016-12-28
- Peptides
- Diphosphomevalonate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A