- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DP6: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 10 residues within 4Å:- Chain A: V.45, V.59, L.64, E.68, Y.72, S.94, S.106, S.107, G.110, K.190
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:E.68, A:S.94, A:S.94, A:S.106, A:S.107, A:S.107
- Water bridges: A:T.47, A:A.73, A:S.106, A:S.139, A:K.190, A:K.190, A:K.190, A:S.194
- Salt bridges: A:K.190
ADP.7: 10 residues within 4Å:- Chain B: V.45, V.59, L.64, E.68, Y.72, S.94, S.106, S.107, G.110, K.190
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:E.68, B:S.94, B:S.94, B:S.106, B:S.107, B:S.107
- Water bridges: B:Y.72, B:A.73, B:S.106, B:S.139, B:K.190, B:K.190, B:K.190, B:S.194
- Salt bridges: B:K.190
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.3: 7 residues within 4Å:- Chain A: R.22, G.23, L.31, K.155, E.157, E.159, L.212
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.23, A:K.155, A:E.157
AMP.8: 7 residues within 4Å:- Chain B: R.22, G.23, L.31, K.155, E.157, E.159, L.212
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.23, B:K.155, B:E.157
- Water bridges: B:E.159, B:E.159
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 2 residues within 4Å:- Chain A: R.158, D.163
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.158
SO4.5: 7 residues within 4Å:- Chain A: G.148, G.149, Q.168, R.171, H.172, D.317, G.318
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.148, A:Q.168, A:H.172, A:G.318
- Salt bridges: A:R.171, A:H.172
SO4.9: 2 residues within 4Å:- Chain B: R.158, D.163
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.163
- Salt bridges: B:R.158
SO4.10: 7 residues within 4Å:- Chain B: G.148, G.149, Q.168, R.171, H.172, D.317, G.318
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:G.148, B:Q.168, B:H.172, B:G.318
- Salt bridges: B:R.171, B:H.172
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Motoyama, K. et al., A Single Amino Acid Mutation Converts (R)-5-Diphosphomevalonate Decarboxylase into a Kinase. J. Biol. Chem. (2017)
- Release Date
- 2016-12-28
- Peptides
- Diphosphomevalonate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DP6: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Motoyama, K. et al., A Single Amino Acid Mutation Converts (R)-5-Diphosphomevalonate Decarboxylase into a Kinase. J. Biol. Chem. (2017)
- Release Date
- 2016-12-28
- Peptides
- Diphosphomevalonate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A