SMTL ID : 5gnl.1

Cytochrome P450 Vdh (CYP107BR1) F106V mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 30 residues within 4Å: Chain A: F.58, K.65, M.87, I.88, H.95, R.99, L.232, L.233, A.236, G.237, T.240, T.241, L.244, L.277, P.282, V.283, P.287, R.289, L.312, F.339, F.340, G.341, I.344, H.345, C.347, L.348, G.349, L.352, A.353 Ligands: PG0.2 22 PLIP interactions: 21 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:L.232, A:L.233, A:L.244, A:L.277, A:P.282, A:P.287, A:L.312, A:F.340, A:F.340, A:L.348, A:L.352, A:A.353 Water bridges: A:H.345 Salt bridges: A:K.65, A:H.95, A:R.99, A:R.289, A:H.345, A:H.345 pi-Stacking: A:F.340 Metal complexes: A:C.347, H2O.3

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.2: 6 residues within 4Å: Chain A: I.88, L.232, I.235, A.236, P.287 Ligands: HEM.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yasutake, Y. et al., Structural insights into the mechanism of the drastic changes in enzymatic activity of the cytochrome P450 vitamin D3 hydroxylase (CYP107BR1) caused by a mutation distant from the active site. Acta Crystallogr F Struct Biol Commun (2017)

Release Date

2017-05-17

Peptides

Vitamin D(3) 25-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D(3) 25-hydroxylase