SMTL ID : 5gq9.1

Crystal structure of Thermus thermophilus Argonaute in complex with g1C siDNA and DNA target

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 7 residues within 4Å: Chain A: D.478, A.479, E.512, D.546 Chain C: C.6, T.7 Ligands: MG.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.478, A:D.546 MG.2: 5 residues within 4Å: Chain A: D.478, A.479, D.660 Chain C: T.7 Ligands: MG.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.478, A:D.660 MG.3: 6 residues within 4Å: Chain A: Q.433, K.457, V.685 Chain B: C.1, G.2, A.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.685 MG.4: 6 residues within 4Å: Chain D: Q.433, K.457, V.685 Chain E: C.1, G.2, A.3 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:V.685 MG.5: 6 residues within 4Å: Chain D: D.478, A.479, E.512, D.546 Chain F: C.6, T.7 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.478, D:D.546 MG.6: 5 residues within 4Å: Chain D: D.478, D.660, K.664 Chain F: C.6, T.7 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.478, D:D.660

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, H. et al., Crystal structure of Thermus thermophilus Argonaute in complex with g1C siDNA and DNA target. To Be Published

Release Date

2017-08-09

Peptides

Thermus thermophilus Argonaute: AD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

Thermus thermophilus Argonaute

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