SMTL ID : 5gqe.2 (2 other biounits)

Crystal structure of michaelis complex of xylanase mutant (T82A, N127S, and E128H) from Streptomyces olivaceoviridis E-86

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x XYP- XYP- XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose

XYP-XYP-XYP-XYP-XYP.1: 16 residues within 4Å: Chain A: E.44, N.45, K.48, H.81, Q.88, H.128, Y.172, N.173, Q.205, H.207, N.209, S.212, E.236, W.266, W.274, R.275 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.44, A:N.45, A:Q.88, A:W.266

1 x XYP- XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose

XYP-XYP-XYP-XYP.2: 11 residues within 4Å: Chain A: D.408, A.409, V.410, G.411, G.412, Q.421, Y.423, S.424, C.425, S.426, N.430 No protein-ligand interaction detected (PLIP)

1 x XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose(Non-covalent)

XYP-XYP.3: 8 residues within 4Å: Chain A: D.325, V.326, P.327, N.328, Q.338, Y.340, H.343, N.347 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, R. et al., Azidolysis by the Formation of Stable Ser-His Catalytic Dyad in a Glycoside Hydrolase Family 10 Xylanase Mutant. J.Appl.Glyosci. (2019)

Release Date

2017-08-09

Peptides

Beta-xylanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-xylanase

Related Entries With Identical Sequence