SMTL ID : 5gqw.1

Crystal structure of branching enzyme W610N mutant from Cyanothece sp. ATCC 51142

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: E.592, W.593, Y.596, R.600, P.642, Y.734, G.735 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.600, A:G.735 Water bridges: A:P.642, A:Q.645 GOL.2: 8 residues within 4Å: Chain A: E.725, N.728, A.731, N.738, M.739, G.740, N.741, L.742 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.738, A:G.740, A:L.742 Water bridges: A:Q.733, A:G.740, A:G.743 GOL.3: 5 residues within 4Å: Chain A: E.468, G.469, W.471, I.472, A.473 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.469, A:W.471, A:A.473 GOL.4: 4 residues within 4Å: Chain A: Y.461, N.463, Y.464, T.510 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.463, A:N.463 Water bridges: A:N.463, A:L.465 GOL.5: 6 residues within 4Å: Chain A: G.208, Y.232, V.244, I.249, R.363, E.365 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.365 Water bridges: A:R.363

4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain A: D.632 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.632, H2O.7, H2O.13, H2O.16, H2O.24 MG.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hayashi, M. et al., Bound Substrate in the Structure of Cyanobacterial Branching Enzyme Supports a New Mechanistic Model. J. Biol. Chem. (2017)

Release Date

2017-02-22

Peptides

1,4-alpha-glucan branching enzyme GlgB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1,4-alpha-glucan branching enzyme GlgB

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