SMTL ID : 5gqz.1 (1 other biounit)

Crystal structure of branching enzyme Y500A mutant from Cyanothece sp. ATCC 51142

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: E.592, W.593, Y.596, R.600, P.642, Y.734, G.735 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.592, A:R.600, A:G.735 Water bridges: A:R.600, A:P.642 GOL.2: 8 residues within 4Å: Chain A: E.725, N.728, A.731, N.738, M.739, G.740, N.741, L.742 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.738, A:G.740, A:L.742 Water bridges: A:Q.733, A:G.740, A:G.743 GOL.3: 4 residues within 4Å: Chain A: Y.564, F.668, E.669, Y.670 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.564, A:Y.670 Water bridges: A:R.517, A:F.668, A:E.669, A:H.671 GOL.4: 4 residues within 4Å: Chain A: Y.461, N.463, Y.464, T.510 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.463, A:N.463 Water bridges: A:N.463 GOL.5: 6 residues within 4Å: Chain A: G.208, Y.232, V.244, I.249, R.363, E.365 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.363 GOL.6: 3 residues within 4Å: Chain A: H.666, H.671, D.693 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.693 Water bridges: A:H.666 GOL.7: 3 residues within 4Å: Chain A: W.183, K.212, E.224 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.212 Water bridges: A:W.183, A:K.212, A:K.212, A:K.212, A:E.234, A:E.234, A:E.234 GOL.8: 6 residues within 4Å: Chain A: E.725, F.727, N.728, A.731, Q.733, Y.734 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.725, A:E.725, A:N.728, A:N.728, A:Y.734 Water bridges: A:L.726, A:Q.733 GOL.9: 4 residues within 4Å: Chain A: P.169, R.428, H.429, E.430 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.428, A:E.430 Water bridges: A:H.429, A:H.429

4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.11: 1 residues within 4Å: Chain A: D.632 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.632, H2O.13, H2O.14, H2O.14, H2O.22 MG.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hayashi, M. et al., Structural basis for substrate binding and catalysis of branching enzyme from Cyanothece sp. ATCC 51142. To be published

Release Date

2017-08-16

Peptides

1,4-alpha-glucan branching enzyme GlgB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1,4-alpha-glucan branching enzyme GlgB

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