SMTL ID : 5gr6.1

Crystal structure of branching enzyme Y500A/D501A double mutant from Cyanothece sp. ATCC 51142

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: E.592, W.593, Y.596, R.600, P.642, Y.734, G.735 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.592, A:R.600, A:G.735 Water bridges: A:R.600, A:P.642 GOL.2: 8 residues within 4Å: Chain A: E.725, N.728, A.731, N.738, M.739, G.740, N.741, L.742 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.738, A:G.740, A:L.742 Water bridges: A:Q.733, A:Q.733, A:G.740, A:G.743 GOL.3: 5 residues within 4Å: Chain A: E.468, G.469, W.471, I.472, A.473 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.469, A:W.471, A:A.473 GOL.4: 4 residues within 4Å: Chain A: Y.461, N.463, Y.464, T.510 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.463, A:N.463, A:N.463 Water bridges: A:L.465 GOL.5: 6 residues within 4Å: Chain A: G.208, Y.232, V.244, I.249, R.363, E.365 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.365 Water bridges: A:R.363 GOL.6: 2 residues within 4Å: Chain A: R.428, E.430 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.428, A:R.428 Water bridges: A:H.429

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.7: 2 residues within 4Å: Chain A: D.454, E.507 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Chain A: D.632 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.632, H2O.8, H2O.10, H2O.13, H2O.14 MG.9: 1 residues within 4Å: Chain A: E.214 No protein-ligand interaction detected (PLIP) MG.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hayashi, M. et al., Structural basis for substrate binding and catalysis of branching enzyme from Cyanothece sp. ATCC 51142. To be published

Release Date

2017-08-16

Peptides

1,4-alpha-glucan branching enzyme GlgB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1,4-alpha-glucan branching enzyme GlgB

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