SMTL ID : 5gsr.1 (1 other biounit)

Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide I5A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TYR- TYR- SER- ILE- ALA- PRO- HIS- SER- ILE: 9-mer peptide from Spike protein(Non-covalent)

TYR-TYR-SER-ILE-ALA-PRO-HIS-SER-ILE.1: 31 residues within 4Å: Chain B: L.5, Y.7, V.9, F.22, A.24, F.45, Y.59, E.62, Q.63, R.66, D.70, W.73, V.76, S.77, T.80, A.81, Y.84, F.95, R.97, F.99, Q.114, T.143, K.146, W.147, D.152, Y.155, Y.156, Y.159, E.163, W.167, Y.171 32 PLIP interactions: 32 interactions with chain B Hydrophobic interactions: B:V.9, B:A.24, B:F.45, B:Y.59, B:D.70, B:T.80, B:A.81, B:F.95, B:F.95, B:Y.155, B:W.167, B:W.167, B:W.167 Hydrogen bonds: B:Y.7, B:Q.63, B:Q.63, B:R.66, B:D.70, B:D.70, B:D.70, B:S.77, B:R.97, B:R.97, B:Q.114, B:K.146, B:D.152, B:D.152, B:Y.159, B:Y.171, B:Y.171 Water bridges: B:D.152 pi-Stacking: B:F.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W.J. et al., Protective T Cell Responses Featured by Concordant Recognition of Middle East Respiratory Syndrome Coronavirus-Derived CD8+ T Cell Epitopes and Host MHC. J. Immunol. (2017)

Release Date

2017-04-26

Peptides

Beta-2-microglobulin: A
H-2 class I histocompatibility antigen, K-D alpha chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

Beta-2-microglobulin

H-2 class I histocompatibility antigen, K-D alpha chain

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