SMTL ID : 5gtf.1 (3 other biounits)

Crystal structure of onion lachrymatory factor synthase (LFS) containing glycerol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: L.47, M.51, L.54, R.71, F.84, E.88, Y.102, F.104, Y.114, W.133, W.155 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.71, A:E.88, A:Y.114 GOL.2: 6 residues within 4Å: Chain A: H.48, S.55, V.56, C.57, E.58 Ligands: SO4.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.57, A:C.57

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: N.46, H.48, K.49 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.46 Water bridges: A:K.49 Salt bridges: A:H.48, A:K.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arakawa, T. et al., Dissecting the Stereocontrolled Conversion of Short-Lived Sulfenic Acid by Lachrymatory Factor Synthase. Acs Catalysis (2020)

Release Date

2017-08-23

Peptides

Lachrymatory-factor synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lachrymatory-factor synthase

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