SMTL ID : 5gvd.2 (1 other biounit)

Human TDRD3 DUF1767-OB domains

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: G.1, H.4 Ligands: MG.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.1, A:G.1, A:G.1 Salt bridges: A:H.4

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: K.79, R.100, Q.102, E.163, K.164 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.79, A:R.100, A:K.164, A:K.164 Water bridges: A:K.79, A:Q.102, A:Q.102 EDO.3: 2 residues within 4Å: Chain A: W.18, I.41 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.18 EDO.4: 1 residues within 4Å: Chain A: Q.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.7, A:Q.7

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: H.4 Ligands: PO4.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goto-Ito, S. et al., Structural basis of the interaction between Topoisomerase III beta and the TDRD3 auxiliary factor. Sci Rep (2017)

Release Date

2017-06-14

Peptides

Tudor domain-containing protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tudor domain-containing protein 3

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