SMTL ID : 5gwz.1

The structure of Porcine epidemic diarrhea virus main protease in complex with an inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

homo-dimer

Ligands

2 x 02J- ALA- VAL- LEU- PJE- 010: N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE(Non-covalent)

02J-ALA-VAL-LEU-PJE-010.1: 21 residues within 4Å: Chain A: M.30, A.31, L.32, H.46, I.56, F.144, N.146, G.147, C.149, H.167, Q.168, L.169, E.170, G.172, H.176, D.191, Q.192, P.193, T.194, L.195, Q.196 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.56, A:L.195 Hydrogen bonds: A:F.144, A:G.147, A:C.149, A:Q.168, A:E.170, A:E.170, A:T.194 Salt bridges: A:H.46 02J-ALA-VAL-LEU-PJE-010.2: 21 residues within 4Å: Chain B: M.30, A.31, L.32, H.46, T.52, F.144, N.146, G.147, C.149, H.167, Q.168, L.169, E.170, L.171, G.172, H.176, Q.192, P.193, T.194, L.195, Q.196 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:N.146, B:L.169, B:L.171 Hydrogen bonds: B:G.147, B:C.149, B:Q.168, B:E.170, B:E.170, B:E.170, B:E.170, B:T.194 Water bridges: B:T.52 Salt bridges: B:H.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Michael Acceptor-Based Peptidomimetic Inhibitor of Main Protease from Porcine Epidemic Diarrhea Virus. J. Med. Chem. (2017)

Release Date

2017-03-29

Peptides

PEDV main protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

PEDV main protease