SMTL ID : 5gym.1 (1 other biounit)

Crystal structure of RXR-LBD complexed with fluorescent ligand at 2.60 angstroms resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

2 x WY5: 7-oxidanyl-2-oxidanylidene-6-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)chromene-3-carboxylic acid(Non-covalent)

WY5.1: 7 residues within 4Å: Chain A: R.97, A.98, W.100, L.228, L.231 Chain D: L.231, K.235 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain D Hydrophobic interactions: A:W.100, A:L.228, D:L.231, D:L.231 Hydrogen bonds: A:R.97, D:K.235 Salt bridges: A:R.97, D:K.235 pi-Stacking: A:W.100 WY5.2: 7 residues within 4Å: Chain B: R.97, W.100, L.228 Chain C: V.60, I.63, K.235, I.242 11 PLIP interactions: 7 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:V.60, C:I.63, C:K.235, C:I.242, B:W.100, B:W.100, B:L.228 Salt bridges: C:K.235, C:K.235 pi-Cation interactions: C:K.235 Hydrogen bonds: B:R.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakano, S. et al., Crystal structure of RXR-LBD complexed with fluorescent ligand at 2.60 angstroms resolution. To Be Published

Release Date

2017-11-01

Peptides

Retinoic acid receptor RXR-alpha: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
H

Retinoic acid receptor RXR-alpha