SMTL ID : 5gzt.1

Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain B: E.44, T.50, F.52, S.72 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.44

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain B: M.882, H.883, G.886, F.887, K.935, Y.937 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:H.883, B:Y.937, B:Y.937 Water bridges: B:H.883, B:G.886 Salt bridges: B:H.883, B:K.935

10 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain B: S.72, F.73, T.92, I.93, E.94 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.73, B:E.94 Water bridges: B:T.116, B:T.116 FMT.4: 2 residues within 4Å: Chain B: S.111, G.112 1 PLIP interactions: 1 interactions with chain B Water bridges: B:S.111 FMT.5: 6 residues within 4Å: Chain B: K.272, F.274, P.474, Y.475, L.476, K.526 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.526 Water bridges: B:K.272 FMT.6: 9 residues within 4Å: Chain B: R.579, Y.580, W.581, P.588, D.601, A.603, T.682, P.685, L.744 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.579, B:D.601 FMT.7: 6 residues within 4Å: Chain B: E.859, G.860, F.861, S.862, D.863, K.906 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.860, B:S.862, B:D.863, B:D.863 Water bridges: B:F.861, B:F.861 FMT.8: 4 residues within 4Å: Chain B: V.692, T.693, V.694, Y.703 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.694, B:Y.703 FMT.9: 4 residues within 4Å: Chain B: K.41, S.70, N.89, S.90 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.41, B:S.70, B:N.89, B:S.90 Water bridges: B:S.90 FMT.10: 6 residues within 4Å: Chain B: R.735, A.752, P.753, R.1006, K.1007, G.1009 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.735, B:P.753 Water bridges: B:R.735 FMT.11: 4 residues within 4Å: Chain B: V.568, N.569, S.629, D.630 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.630, B:D.630 Water bridges: B:N.569, B:D.630, B:R.712, B:R.712, B:R.712 FMT.12: 4 residues within 4Å: Chain B: G.672, Y.718, V.719, N.720 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.672

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Itoh, T. et al., Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery. PLoS ONE (2016)

Release Date

2016-12-28

Peptides

Chitinase: A
Chitinase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chitinase

Chitinase