SMTL ID : 5h80.1

Biotin Carboxylase domain of single-chain bacterial carboxylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: R.236, L.275, P.276, V.306, T.307, P.308 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.236 EDO.2: 6 residues within 4Å: Chain A: R.430 Chain B: E.329, E.330, T.334, D.335, R.403 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.430, B:E.330 Water bridges: A:G.401, A:H.428, B:D.335 EDO.3: 4 residues within 4Å: Chain A: T.32, L.54, G.55, W.56 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.32, A:T.32 Water bridges: A:L.54, A:W.56 EDO.4: 3 residues within 4Å: Chain A: L.151, R.154, E.293 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.154 EDO.5: 6 residues within 4Å: Chain A: E.330, T.334, D.335, R.403 Chain B: P.400, R.430 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.430, A:E.330, A:R.403 Water bridges: B:G.401, A:D.335, A:D.335 EDO.6: 6 residues within 4Å: Chain B: R.236, L.275, P.276, V.306, T.307, P.308 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.236 EDO.7: 7 residues within 4Å: Chain A: R.430 Chain B: T.334, D.335, T.338, A.339, V.352, G.353 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.334, B:D.335, B:D.335, B:A.339 Water bridges: B:T.334, B:T.338, B:G.353, A:R.430

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hagmann, A. et al., Hybrid Structure of a Dynamic Single-Chain Carboxylase from Deinococcus radiodurans. Structure (2016)

Release Date

2016-07-20

Peptides

Carboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Carboxylase