SMTL ID : 5h9m.1

Crystal structure of siah2 SBD domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.9, C.16, H.28, C.32 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:C.16, A:H.28, A:C.32 ZN.2: 4 residues within 4Å: Chain A: C.39, C.46, H.58, H.63 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.39, A:C.46, A:H.58, A:H.63 ZN.8: 4 residues within 4Å: Chain B: C.9, C.16, H.28, C.32 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:C.16, B:H.28, B:C.32 ZN.9: 4 residues within 4Å: Chain B: C.39, C.46, H.58, H.63 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.39, B:C.46, B:H.58, B:H.63

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: Y.37, S.38, H.155 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: H.63, K.64, S.65 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: Q.107, E.108 Ligand excluded by PLIP

4 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.5: 3 residues within 4Å: Chain A: C.95, F.96, G.97 No protein-ligand interaction detected (PLIP) UNX.6: 2 residues within 4Å: Chain A: D.73, N.187 No protein-ligand interaction detected (PLIP) UNX.12: 2 residues within 4Å: Chain B: K.109, E.111 No protein-ligand interaction detected (PLIP) UNX.13: 1 residues within 4Å: Chain B: W.48 No protein-ligand interaction detected (PLIP)

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.7: 6 residues within 4Å: Chain A: F.132, A.133, T.150 Chain B: R.142, R.143, R.144 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:T.192, B:R.142 1PE.11: 8 residues within 4Å: Chain B: C.41, P.42, S.65, I.66, V.87, D.88, W.89, V.90 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.90 Water bridges: B:D.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Q. et al., Crystal structure of siah2 SBD domain. to be published

Release Date

2016-02-17

Peptides

E3 ubiquitin-protein ligase SIAH2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase SIAH2