SMTL ID : 5hax.1

Crystal structure of Chaetomium thermophilum Nup170 NTD-Nup53 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: S.45, S.46, W.47, R.359, N.500 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.45, A:S.46, A:S.46, A:S.46, A:S.46 Water bridges: A:W.47 Salt bridges: A:R.359 PO4.2: 2 residues within 4Å: Chain A: S.272, R.275 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.272, A:S.272 Water bridges: A:K.268 Salt bridges: A:K.268, A:R.275 PO4.3: 8 residues within 4Å: Chain A: C.30, R.31, P.32, G.33, A.34, S.35, F.346, K.424 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.31, A:R.31, A:A.34, A:A.34 Water bridges: A:R.31, A:R.31 Salt bridges: A:R.31 PO4.4: 3 residues within 4Å: Chain A: R.171, G.172, G.173 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.171, A:R.171, A:G.173, A:S.193 Salt bridges: A:R.171

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 10 residues within 4Å: Chain A: D.27, S.28, C.30, R.31, P.32, K.306, L.307, S.322, Q.345, F.346 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.27

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: G.172, G.173, S.174, H.198, K.215, N.217 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.173 Water bridges: A:S.174, A:H.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, D.H. et al., Architecture of the symmetric core of the nuclear pore. Science (2016)

Release Date

2016-04-20

Peptides

Nucleoporin NUP170: A
Nucleoporin NUP53: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nucleoporin NUP170

Nucleoporin NUP53