- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x PIS: TRIHYDROGEN THIODIPHOSPHATE(Non-covalent)
PIS.2: 10 residues within 4Å:- Chain A: D.21, G.22, H.23, R.24, K.25, H.38, R.72
- Ligands: MG.1, 61G.3, ISY.5
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:D.21, A:D.21, A:D.21, A:G.22, A:G.22, A:H.23, A:R.24, A:R.24, A:K.25, A:R.72, A:R.72
- Salt bridges: A:R.24
PIS.7: 10 residues within 4Å:- Chain B: D.21, G.22, H.23, R.24, K.25, H.38, R.72
- Ligands: MG.6, 61G.8, ISY.10
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:D.21, B:D.21, B:G.22, B:G.22, B:H.23, B:H.23, B:R.24, B:K.25, B:R.72, B:R.72
- Water bridges: B:R.24
- Salt bridges: B:R.24
- 2 x 61G: 2-methylbuta-1,3-diene(Non-covalent)
61G.3: 10 residues within 4Å:- Chain A: I.20, H.23, H.38, A.64, N.69, R.72, L.80, Y.84
- Ligands: PIS.2, ISY.5
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.20, A:L.80
61G.8: 10 residues within 4Å:- Chain B: I.20, H.23, H.38, A.64, N.69, R.72, L.80, Y.84
- Ligands: PIS.7, ISY.10
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:I.20, B:L.80
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: H.135, T.183, K.184, F.185
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.184
- Water bridges: A:H.135, A:H.135
- Salt bridges: A:H.135, A:K.184
SO4.9: 4 residues within 4Å:- Chain B: H.135, T.183, K.184, F.185
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.184
- Water bridges: B:H.135, B:H.135
- Salt bridges: B:H.135, B:K.184
- 2 x ISY: 3-methylbut-3-enylsulfanyl(phosphonooxy)phosphinic acid(Non-covalent)
ISY.5: 17 residues within 4Å:- Chain A: I.19, I.20, D.21, W.63, A.64, S.66, N.69, R.72, R.193, R.199, S.201
- Chain B: G.241, F.242, G.243
- Ligands: MG.1, PIS.2, 61G.3
21 PLIP interactions:4 interactions with chain B, 17 interactions with chain A- Hydrogen bonds: B:G.241, B:F.242, B:G.243, B:G.243, A:N.69, A:R.72, A:S.201, A:S.201
- Hydrophobic interactions: A:I.19, A:I.20, A:W.63, A:W.63, A:W.63, A:W.63
- Water bridges: A:D.21, A:D.21, A:R.193, A:R.199, A:R.199
- Salt bridges: A:R.193, A:R.199
ISY.10: 17 residues within 4Å:- Chain A: G.241, F.242, G.243
- Chain B: I.19, I.20, D.21, W.63, A.64, S.66, N.69, R.72, R.193, R.199, S.201
- Ligands: MG.6, PIS.7, 61G.8
19 PLIP interactions:15 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:I.19, B:I.20, B:W.63, B:W.63, B:W.63, B:W.63
- Hydrogen bonds: B:N.69, B:R.72, B:S.201, B:S.201, A:G.241, A:F.242, A:G.243, A:G.243
- Water bridges: B:R.193, B:R.199, B:R.199
- Salt bridges: B:R.193, B:R.199
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, M.X. et al., Structure and Function of a "Head-to-Middle" Prenyltransferase: Lavandulyl Diphosphate Synthase. Angew.Chem.Int.Ed.Engl. (2016)
- Release Date
- 2016-03-02
- Peptides
- prenyltransference for protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x PIS: TRIHYDROGEN THIODIPHOSPHATE(Non-covalent)
- 2 x 61G: 2-methylbuta-1,3-diene(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ISY: 3-methylbut-3-enylsulfanyl(phosphonooxy)phosphinic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, M.X. et al., Structure and Function of a "Head-to-Middle" Prenyltransferase: Lavandulyl Diphosphate Synthase. Angew.Chem.Int.Ed.Engl. (2016)
- Release Date
- 2016-03-02
- Peptides
- prenyltransference for protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A