SMTL ID : 5hik.1

Crystal structure of glycine sarcosine N-methyltransferase from Methanohalophilus portucalensis in complex with S-adenosylmethionine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 17 residues within 4Å: Chain A: R.64, A.88, T.89, G.90, N.94, D.109, G.110, S.111, M.114, A.134, D.135, W.136, R.137, L.153, G.154, S.156, H.159 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.90, A:N.94, A:G.110, A:S.111, A:D.135, A:W.136, A:L.153 Water bridges: A:T.91, A:T.91, A:T.91, A:R.137, A:L.153 Salt bridges: A:R.64 pi-Stacking: A:W.136, A:W.136, A:W.136

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: D.56, W.61, N.121, H.125 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.56, A:H.125 Water bridges: A:N.121 EDO.3: 8 residues within 4Å: Chain A: E.68, I.72, I.73, F.93, N.94, R.97, L.98, L.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.94, A:R.97 EDO.4: 5 residues within 4Å: Chain A: W.61, A.65, R.97, Q.100, H.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.100 EDO.5: 6 residues within 4Å: Chain A: R.188, N.189, I.193, H.204, P.274, D.275 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.188, A:R.188, A:N.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y.R. et al., Structural Analysis of Glycine Sarcosine N-methyltransferase from Methanohalophilus portucalensis Reveals Mechanistic Insights into the Regulation of Methyltransferase Activity. Sci Rep (2016)

Release Date

2016-11-23

Peptides

Glycine sarcosine N-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycine sarcosine N-methyltransferase

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