SMTL ID : 5hj3.1 (1 other biounit)

Crystal structure of host-primed Ebola virus GP, GPcl.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.1: 17 residues within 4Å: Chain A: L.55, K.140, E.141, G.142, A.143, V.165 Chain B: Q.7, P.8, N.62, T.65 Chain D: K.36, W.56, S.58, T.59 Chain J: L.28, W.30, F.34 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:K.36, D:S.58, D:S.58, D:T.59, D:T.59 NAG-NAG-BMA-MAN-MAN-MAN-MAN.2: 17 residues within 4Å: Chain B: L.28, W.30, F.34 Chain E: L.55, K.140, E.141, G.142, A.143, V.165 Chain F: Q.7, P.8, N.62, T.65 Chain H: K.36, W.56, S.58, T.59 5 PLIP interactions: 5 interactions with chain H Hydrogen bonds: H:K.36, H:S.58, H:S.58, H:T.59, H:T.59 NAG-NAG-BMA-MAN-MAN-MAN-MAN.3: 17 residues within 4Å: Chain F: L.28, W.30, F.34 Chain I: L.55, K.140, E.141, G.142, A.143, V.165 Chain J: Q.7, P.8, N.62, T.65 Chain L: K.36, W.56, S.58, T.59 5 PLIP interactions: 5 interactions with chain L Hydrogen bonds: L:K.36, L:S.58, L:S.58, L:T.59, L:T.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bornholdt, Z.A. et al., Host-Primed Ebola Virus GP Exposes a Hydrophobic NPC1 Receptor-Binding Pocket, Revealing a Target for Broadly Neutralizing Antibodies. Mbio (2016)

Release Date

2016-03-09

Peptides

Envelope glycoprotein: AEI
Envelope glycoprotein: BFJ
KZ52 Antibody Fragment: CGK
KZ52 Antibody Fragment: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

E
C

I
C

B
D

F
D

J
D

C
I

G
I

K
I

D
J

H
J

L
J

Envelope glycoprotein

Envelope glycoprotein

KZ52 Antibody Fragment

KZ52 Antibody Fragment

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