SMTL ID : 5hp8.1

Crystal structures of RidA in complex with pyruvate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

3 x PYR: PYRUVIC ACID(Non-covalent)

PYR.1: 7 residues within 4Å: Chain A: F.84, R.102, S.103, T.104 Chain C: L.32, P.111, E.117 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:L.32, C:P.111 Water bridges: C:G.30 Hydrogen bonds: A:T.104, A:T.104 Salt bridges: A:R.102 PYR.2: 7 residues within 4Å: Chain A: L.32, P.111, E.117 Chain B: F.84, R.102, S.103, T.104 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.102, B:T.104, B:T.104 Salt bridges: B:R.102 Hydrophobic interactions: A:L.32 PYR.3: 7 residues within 4Å: Chain B: L.32, P.111, E.117 Chain C: F.84, R.102, S.103, T.104 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:T.104, C:T.104 Salt bridges: C:R.102 Hydrophobic interactions: B:L.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., Crystal structures of RidA, an important enzyme for the prevention of toxic side products. Sci Rep (2016)

Release Date

2016-10-12

Peptides

Reactive Intermediate Deaminase A, chloroplastic: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Reactive Intermediate Deaminase A, chloroplastic

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