SMTL ID : 5hs2.1

Crystal structure of IspD complexed with CTP and Mg2+ from Bacillus subtilis at 1.90 Angstroms resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x CTP: CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

CTP.1: 20 residues within 4Å: Chain A: P.8, A.9, A.10, G.11, Q.12, G.13, K.14, R.15, K.22, L.23, G.80, D.81, E.82, R.83, S.86, D.104, G.105, A.106, K.209 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:A.9, A:A.10, A:G.11, A:G.13, A:K.14, A:R.15, A:G.80, A:S.86, A:G.105, A:A.106 Water bridges: A:Q.12, A:Q.12, A:R.15, A:M.16, A:K.22 Salt bridges: A:R.15, A:R.15, A:K.22, A:K.22, A:K.22, A:K.209

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: R.15 Ligands: CTP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, Y. et al., A structural and functional study on the 2-C-methyl-d-erythritol-4-phosphate cytidyltransferase (IspD) from Bacillus subtilis. Sci Rep (2016)

Release Date

2016-11-23

Peptides

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

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