- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FAS: ARABINO-FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 9 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)
P6G.2: 15 residues within 4Å:- Chain A: K.407, V.477, T.478, S.479, L.483, E.494, W.518, T.519
- Chain E: K.407, T.478, S.479, L.483, E.494, W.518, T.519
7 PLIP interactions:5 interactions with chain E, 2 interactions with chain A- Hydrogen bonds: E:T.478, E:S.479, E:E.494, E:E.494, A:T.478, A:S.479
- Water bridges: E:S.479
P6G.7: 14 residues within 4Å:- Chain A: N.42, L.44, L.221, I.222, C.223, N.224
- Chain B: T.156, P.158, C.160, Q.161, L.164, E.168, Y.174, H.189
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:P.158, B:Q.161, B:Q.161, B:E.168, A:N.42, A:C.223, A:N.224
P6G.8: 15 residues within 4Å:- Chain B: K.407, T.478, S.479, H.480, E.494, W.518, T.519
- Chain G: K.407, T.478, S.479, H.480, L.483, E.494, W.518, T.519
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain G- Hydrogen bonds: B:T.478, B:S.479, B:E.494, B:E.494, G:T.478, G:S.479, G:E.494
- Water bridges: G:S.479
P6G.13: 13 residues within 4Å:- Chain A: C.160, Q.161, L.164, E.168, Y.174, H.189
- Chain C: N.42, L.44, N.46, L.221, I.222, C.223, N.224
9 PLIP interactions:5 interactions with chain C, 4 interactions with chain A- Hydrogen bonds: C:N.42, C:C.223, C:N.224, A:Q.161, A:E.168, A:H.189
- Water bridges: C:N.46, C:K.256, A:Y.174
P6G.14: 12 residues within 4Å:- Chain C: T.156, P.158, C.160, Q.161, L.164, E.168, Y.174, H.189
- Chain D: N.42, L.221, C.223, N.224
8 PLIP interactions:5 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:P.158, C:Q.161, C:Q.161, C:E.168, C:Y.174, D:N.42, D:C.223, D:N.224
P6G.21: 15 residues within 4Å:- Chain D: K.407, V.477, T.478, S.479, H.480, E.494, W.518, T.519
- Chain H: K.407, T.478, S.479, L.483, E.494, W.518, T.519
8 PLIP interactions:4 interactions with chain D, 4 interactions with chain H- Hydrogen bonds: D:T.478, D:S.479, D:E.494, D:E.494, H:T.478, H:T.478, H:S.479, H:E.494
P6G.25: 11 residues within 4Å:- Chain E: N.42, L.44, N.46, L.221, C.223, N.224
- Chain F: Q.161, L.164, E.168, Y.174, H.189
6 PLIP interactions:3 interactions with chain F, 3 interactions with chain E- Hydrogen bonds: F:Q.161, F:E.168, E:N.42, E:C.223, E:N.224
- Water bridges: F:Y.174
P6G.29: 16 residues within 4Å:- Chain C: K.407, V.477, T.478, S.479, H.480, L.483, E.494, W.518, T.519
- Chain F: K.407, V.477, T.478, S.479, E.494, W.518, T.519
8 PLIP interactions:4 interactions with chain F, 4 interactions with chain C- Hydrogen bonds: F:T.478, F:S.479, F:E.494, F:E.494, C:T.478, C:T.478, C:S.479, C:E.494
P6G.30: 14 residues within 4Å:- Chain F: N.42, L.44, N.46, L.221, I.222, C.223, N.224
- Chain H: C.160, Q.161, L.164, R.165, E.168, Y.174, H.189
5 PLIP interactions:2 interactions with chain H, 3 interactions with chain F- Hydrogen bonds: H:Q.161, H:E.168, F:N.42, F:C.223, F:N.224
- 9 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.3: 6 residues within 4Å:- Chain A: W.48, Q.336, F.340
- Chain E: P.506, L.507, L.509
1 PLIP interactions:1 interactions with chain E- Water bridges: E:P.506
PGE.9: 6 residues within 4Å:- Chain B: W.48, Q.336, F.340
- Chain G: P.506, L.507, L.509
2 PLIP interactions:2 interactions with chain B- Water bridges: B:Y.344, B:Y.344
PGE.10: 6 residues within 4Å:- Chain B: P.506, L.507, L.509
- Chain G: W.48, Q.336, F.340
No protein-ligand interaction detected (PLIP)PGE.15: 6 residues within 4Å:- Chain A: Y.155
- Chain C: W.48, Q.336, F.340
- Chain F: L.507, L.509
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:P.506
PGE.22: 6 residues within 4Å:- Chain D: W.48, Q.336, F.340
- Chain H: P.506, L.507, L.509
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain H- Hydrogen bonds: D:W.48, H:P.506
- Water bridges: D:Y.344
PGE.26: 6 residues within 4Å:- Chain A: P.506, L.507, L.509
- Chain E: W.48, Q.336, F.340
No protein-ligand interaction detected (PLIP)PGE.35: 9 residues within 4Å:- Chain E: C.160, Q.161, Y.174, H.189
- Chain G: N.42, L.44, L.221, I.222, C.223
6 PLIP interactions:5 interactions with chain G, 1 interactions with chain E- Hydrogen bonds: G:N.42, G:L.44, G:L.221, G:C.223, E:Q.161
- Water bridges: G:N.224
PGE.36: 7 residues within 4Å:- Chain G: C.160, Q.161, Y.174, H.189
- Chain H: N.42, L.44, C.223
2 PLIP interactions:1 interactions with chain G, 1 interactions with chain H- Hydrogen bonds: G:Q.161, H:N.42
PGE.39: 4 residues within 4Å:- Chain D: L.507
- Chain H: W.48, Q.336, F.340
No protein-ligand interaction detected (PLIP)- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 4 residues within 4Å:- Chain A: D.341
- Chain B: D.341
- Chain C: D.341
- Chain D: D.341
8 PLIP interactions:4 interactions with chain C, 2 interactions with chain A, 2 interactions with chain B- Water bridges: C:K.337, C:K.337, C:D.341, C:D.341, A:K.337, A:D.341, B:K.337, B:K.337
PO4.31: 4 residues within 4Å:- Chain E: D.341
- Chain F: D.341
- Chain G: D.341
- Chain H: D.341
11 PLIP interactions:4 interactions with chain G, 2 interactions with chain F, 2 interactions with chain H, 3 interactions with chain E- Hydrogen bonds: G:D.341, H:D.341, H:D.341, E:D.341
- Water bridges: G:K.337, G:K.337, G:K.337, F:K.337, F:D.341, E:K.337, E:K.337
- 8 x CA: CALCIUM ION(Non-covalent)
CA.5: 1 residues within 4Å:- Chain A: E.382
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:E.382, H2O.8, H2O.11, H2O.12, H2O.12
CA.11: 1 residues within 4Å:- Chain B: E.382
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.382, H2O.20, H2O.21, H2O.22
CA.18: 1 residues within 4Å:- Chain C: E.382
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:E.382, H2O.30, H2O.33, H2O.34, H2O.35
CA.19: 2 residues within 4Å:- Chain C: D.635
- Ligands: GOL.16
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:D.635, H2O.25, H2O.33, H2O.34, H2O.35
CA.23: 1 residues within 4Å:- Chain D: E.382
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:E.382, H2O.36, H2O.40, H2O.42
CA.27: 1 residues within 4Å:- Chain E: E.382
2 PLIP interactions:1 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:E.382, H2O.48
CA.33: 1 residues within 4Å:- Chain F: E.382
4 PLIP interactions:1 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:E.382, H2O.63, H2O.65, H2O.67
CA.37: 1 residues within 4Å:- Chain G: E.382
3 PLIP interactions:1 interactions with chain G, 2 Ligand-Water interactions- Metal complexes: G:E.382, H2O.73, H2O.75
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koch, C. et al., Crystal Structure of Alcohol Oxidase from Pichia pastoris. Plos One (2016)
- Release Date
- 2016-03-09
- Peptides
- Alcohol oxidase 1: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FAS: ARABINO-FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 9 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)
- 9 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 8 x CA: CALCIUM ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koch, C. et al., Crystal Structure of Alcohol Oxidase from Pichia pastoris. Plos One (2016)
- Release Date
- 2016-03-09
- Peptides
- Alcohol oxidase 1: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H